PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn307261 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 29123.2 Da PI: 6.316 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.2 | 3.9e-13 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + + G ++W+ +++ g+ R++k+c++rw +yl Achn307261 14 RGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++ E++++++++++lG++ W++Ia++++ gRt++++k++w++ Achn307261 67 RGVLSEAEEDQIIQLHARLGNR-WSKIASHFP-GRTDNEIKNHWHT 110 6777999***************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-20 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.517 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.39E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-6 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-11 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.98E-4 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.074 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-24 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.48E-10 | 71 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRMV PKLAGLLRCG KSCRLRWINY 60 LRPDLKRGVL SEAEEDQIIQ LHARLGNRWS KIASHFPGRT DNEIKNHWHT RIKKRLKILG 120 LDPVTHTLVK QKEKVEEKIE INPEPNSLKE QGETREKENE AKMGLDETID LLHDYEELCG 180 SLDVGLWLNQ ETTNSNSQSP SLSLKDSPNP MGESSSMKED SIQKWVDSVD SMLSWDGFNQ 240 LEQELLFLEN LQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00510 | DAP | Transfer from AT5G14340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023895144.1 | 1e-123 | myb-related protein 315 | ||||
Swissprot | P81394 | 2e-79 | MYB15_ANTMA; Myb-related protein 315 | ||||
TrEMBL | A0A2R6RJI1 | 0.0 | A0A2R6RJI1_ACTCH; Myb-related protein | ||||
STRING | VIT_14s0219g00050.t01 | 1e-120 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 1e-80 | myb domain protein 40 |
Publications ? help Back to Top | |||
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