PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn307151
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 382aa    MW: 41458.4 Da    PI: 6.0626
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn307151genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-123781247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     g+W++e d  l ++v ++G ++W++Iar ++ g ++k+c++rw + 
       Achn307151 37 GPWSPEGDAVLSRLVSKFGARNWSLIARGIP-GSSGKSCRLRWCNQ 81
                     89*****************************.***********985 PP
2Myb_DNA-binding56.85.1e-1888132147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd +++ a++ +G++ W++Ia+ ++ gRt++ +k++w++ 
       Achn307151  88 RKPFTDEEDHIILAAHAIHGNK-WASIAKLLP-GRTDNAIKNHWNST 132
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.1423182IPR017930Myb domain
SuperFamilySSF466891.39E-2634129IPR009057Homeodomain-like
SMARTSM007175.3E-83584IPR001005SANT/Myb domain
PfamPF002496.2E-123681IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-213789IPR009057Homeodomain-like
CDDcd001673.23E-103880No hitNo description
PROSITE profilePS5129425.21683137IPR017930Myb domain
SMARTSM007176.6E-1587135IPR001005SANT/Myb domain
PfamPF002498.1E-1688132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2390137IPR009057Homeodomain-like
CDDcd001673.74E-1290133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MKEEGQLTDP PFDDDDGGDV GDGDGGGGGF SGSRVTGPWS PEGDAVLSRL VSKFGARNWS  60
LIARGIPGSS GKSCRLRWCN QLDPCVMRKP FTDEEDHIIL AAHAIHGNKW ASIAKLLPGR  120
TDNAIKNHWN STLRRKVMNL KRFKPSTFDT LEEGSLNMTK ASSEETLSCG DINSSKAPMR  180
EDKSLKEKRR NHCEDRPQIN EDHQVAEINH PTLSRPVARV GAFSVYNPLS GSTSGSIVPM  240
QGPLIQAVNP DFGICEFLEG VRGEPIPVRC GHGCCEASRG VPSRRSLLGP EFVEYDEPPP  300
FSSRELAAIA TDLNNIAWIR SGLKSSTQVL ANAANQSVCH GAAEQMDVFE KQNPNNDNFR  360
FDSSRMPTAT FALPAELEGL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-38351376108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028078108.11e-175transcription factor MYB25-like
TrEMBLA0A2R6RTI40.0A0A2R6RTI4_ACTCH; Transcription factor like
STRINGXP_010262707.11e-144(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-102myb domain protein 109