PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn305931
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 543aa    MW: 60740.7 Da    PI: 4.8944
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn305931genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4523.8e-1381725421374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+e+L++cA+av+++dl  +++l+++l++++s +gdp+qRl ay+ e+L arla+s+s +yk+l+++e +    +e l+++++++ev+P++kf+++ aN
  Achn305931 172 LKEVLIACAKAVEDNDLLTVEWLMSELRQMVSVSGDPIQRLGAYMSEGLVARLASSGSAIYKTLKCKEPA---GAELLSYMHMLYEVCPYFKFGYMSAN 267
                 5789*****************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea++ e+r+HiiDf+isqG QW++L+qaLa+Rp+gpp++ iTg+++++s   +   l+ +g+rL++fAe+++vpfef++ v  + ++le+++L v
  Achn305931 268 GAIAEAMKDEDRIHIIDFQISQGSQWVTLIQALAARPGGPPRICITGIDDSTSAyaRGGGLHIVGQRLTRFAESCKVPFEFHA-VPISASMLEVQDLGV 365
                 **************************************************998899999************************.68899********** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +p+E +aVn++l lh+++desvs+e++rd++L++vkslsPk+v++veqe+++n+++Fl rfle+l+yy a+f+s++++lpre++eri+vE+++l+reiv
  Achn305931 366 QPEEPVAVNFALVLHHIPDESVSIENHRDRLLRMVKSLSPKIVTLVEQESNTNTTPFLPRFLETLNYYFAIFESIDVTLPREHKERINVEQHCLAREIV 464
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n++acegaer+ rhe lekWr+r+ +aGF+p+pl++ +++++k+ll+ ++ d y++ee++g+l+lgW++++Lv+ +aW+
  Achn305931 465 NIIACEGAERVDRHELLEKWRSRFYMAGFTPYPLNSVVNATIKTLLESYS-DNYTLEERDGTLYLGWMNQNLVASCAWK 542
                 **************************************************.55*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.294146523IPR005202Transcription factor GRAS
PfamPF035141.3E-135172542IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MQESQKQGNS GGSRRLYYQP AQELKSYTWP PSQILDHNLC SDNGSQVTHF SSDQLCNFES  60
STAASGYPLQ DSPSAFSFSA HGSPLSQPDS QSYASDTLHS PDNTYTSTVR GICLTDDNEM  120
RYKLRELETV MLGPDPNMLE ACDISILGGP NQIPSESENW KQMTEVIRRR DLKEVLIACA  180
KAVEDNDLLT VEWLMSELRQ MVSVSGDPIQ RLGAYMSEGL VARLASSGSA IYKTLKCKEP  240
AGAELLSYMH MLYEVCPYFK FGYMSANGAI AEAMKDEDRI HIIDFQISQG SQWVTLIQAL  300
AARPGGPPRI CITGIDDSTS AYARGGGLHI VGQRLTRFAE SCKVPFEFHA VPISASMLEV  360
QDLGVQPEEP VAVNFALVLH HIPDESVSIE NHRDRLLRMV KSLSPKIVTL VEQESNTNTT  420
PFLPRFLETL NYYFAIFESI DVTLPREHKE RINVEQHCLA REIVNIIACE GAERVDRHEL  480
LEKWRSRFYM AGFTPYPLNS VVNATIKTLL ESYSDNYTLE ERDGTLYLGW MNQNLVASCA  540
WK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6317954126378Protein SCARECROW
5b3h_A2e-6317954125377Protein SCARECROW
5b3h_D2e-6317954125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028103272.10.0scarecrow-like transcription factor PAT1
RefseqXP_028103273.10.0scarecrow-like transcription factor PAT1
RefseqXP_028103274.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2R6PRB70.0A0A2R6PRB7_ACTCH; Scarecrow-like transcription factor
STRINGVIT_19s0090g01740.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]