PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn305801

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 132aa MW: 14539.8 Da PI: 5.6019

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn305801	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	55.3	2e-17	22	75	47	100
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lq+q++ l+++la++++e Achn305801 22 IELPVHQRGDAVSSMVYEANARVRDPVYGCVGSISSLQHQIDVLQTQLAMAQAE 75 56899********************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.25	1	76	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.5E-16	23	73	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MITVADIFFM LIMIIMAKGK MIELPVHQRG DAVSSMVYEA NARVRDPVYG CVGSISSLQH 60 QIDVLQTQLA MAQAEVVHLR MRQFSSTSGR PTTTSPENRS PPPVPISQTK SPFNMDMVVD 120 EPSIEESLWS C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-17	23	77	58	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-17	23	77	58	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006364248.1	2e-48	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9	4e-31	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A2R6Q7E9	7e-74	A0A2R6Q7E9_ACTCH; LOB domain-containing protein
STRING	PGSC0003DMT400022286	6e-48	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	3e-31	LOB domain-containing protein 4