PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn305641 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 28922.9 Da PI: 9.8381 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.2 | 4.7e-14 | 55 | 105 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y GVr ++ +Wv+e+r+p++ + r++lg+f +e+Aa+a++ a+++l+ Achn305641 55 PVYNGVRLKS-CDKWVCEVREPKK---KSRIWLGTFPNPEMAARAYDVAALALYS 105 5799**9766.8*********854...6***********************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.8E-9 | 55 | 104 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-23 | 56 | 119 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.256 | 56 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-18 | 56 | 115 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-26 | 56 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-5 | 57 | 68 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.41E-25 | 57 | 115 | No hit | No description |
PRINTS | PR00367 | 3.9E-5 | 79 | 95 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MNLEDDSSPY SSSSSSLFSN ITKNPSSSSK PTNVPHPTSH KRKVGRNKFR ETRHPVYNGV 60 RLKSCDKWVC EVREPKKKSR IWLGTFPNPE MAARAYDVAA LALYSEMAKL NFPDSATLLP 120 RAKSSSARDI QMAVLEATRA VQLTIPSPSS SPSSSLLSSR RTSLTNHTSP RLTSIPRVKY 180 QKNLLKPAVV PEDYSVVSVR DSKNVLDSSE TGFVDEEALF NMPGLLDSMA EGLLLTPPAM 240 KRGFSWDAMD CDMDMTLWRY * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464341.1 | 3e-73 | dehydration-responsive element-binding protein 3 | ||||
Refseq | XP_028110279.1 | 3e-73 | dehydration-responsive element-binding protein 1F-like | ||||
TrEMBL | A0A2R6Q789 | 0.0 | A0A2R6Q789_ACTCH; Dehydration-responsive element-binding protein like | ||||
STRING | POPTR_0009s14990.1 | 4e-68 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 5e-37 | C-repeat/DRE binding factor 2 |