PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn304191

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

GRAS

Protein Properties

Length: 338aa MW: 38550.8 Da PI: 4.7542

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn304191	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	236.3	1.3e-72	14	330	78	373
GRAS 78 laalkl..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAee 171 +++++l ++++ P+++f++ + N+aI +a+eg+++vHi+Df+i++++QWp+L++ L++R ++pp lRi + + ++ + ++ee+g rLa+fA++ Achn304191 14 ISVTELagYVDLIPWHRFGFCASNSAIFKAIEGCQKVHILDFSITHCMQWPTLIDDLSKRLQKPPFLRISVPSWRPNVppfLNMSIEEVGVRLANFAKS 112 5555666799**********************************************************98886666888999*********** PP GRAS 172 lgvpfefnvl...............vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnses 252 +v fefnv+ + + l++l++++L+++ +Eal++n++ l +l+de+ +++ rd++L+++ +++P++++vv++++d++s+s Achn304191 113 REVLFEFNVInqdsslssrenpsfhYDSLLSNLNPSMLNLRDDEALVINCQNWLRYLPDEQRGSANddsWRDDFLRTIIGVNPRMIIVVDEDSDLGSSS 211 ***********99999999855558999**********************998766655669************************* PP GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351 + r++ +++y + fd+le+ lp++s++ri +E+ +g +i+n++ eg +r+er e +k ++r+++ GF +vp++e+++ ++k ll + + g+ + Achn304191 212 LTSRITTCFNYLWIPFDALETFLPKDSNQRIEYEAD-IGHKIENIIGFEGMQRIERLECGMKLSQRMKNGGFFSVPFDEETVGEVKVLLDEQA-SGWGM 308 ********************************.***************************************************99.8999 PP GRAS 352 eeesgslvlgWkdrpLvsvSaW 373 ++e++ lvl+Wk+++ v ++aW Achn304191 309 KKEDDMLVLTWKGHNSVYATAW 330 ********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	34.059	1	312	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.5E-70	14	330	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MNLNANSALH RRPISVTELA GYVDLIPWHR FGFCASNSAI FKAIEGCQKV HILDFSITHC 60 MQWPTLIDDL SKRLQKPPFL RISVPSWRPN VPPFLNMSIE EVGVRLANFA KSREVLFEFN 120 VINQDSSLSS RENPSFHYDS LLSNLNPSML NLRDDEALVI NCQNWLRYLP DEQRGSANDD 180 SWRDDFLRTI IGVNPRMIIV VDEDSDLGSS SLTSRITTCF NYLWIPFDAL ETFLPKDSNQ 240 RIEYEADIGH KIENIIGFEG MQRIERLECG MKLSQRMKNG GFFSVPFDEE TVGEVKVLLD 300 EQASGWGMKK EDDMLVLTWK GHNSVYATAW VPCGFDD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_B	1e-40	22	332	118	420	Protein SHORT-ROOT
5b3h_E	1e-40	22	332	118	420	Protein SHORT-ROOT
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM405250	3e-34	KM405250.1 Jatropha curcas GRAS10 protein (GRAS10) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028055755.1	0.0	scarecrow-like protein 32
TrEMBL	A0A2R6QCF5	0.0	A0A2R6QCF5_ACTCH; Scarecrow-like protein
STRING	cassava4.1_029854m	1e-177	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10303	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49950.1	1e-97	GRAS family protein