PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn303171
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 346aa    MW: 38628.5 Da    PI: 7.4954
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn303171genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20199249155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr+++ +grW+AeIrdp+    r kr++lg+++t+eeAa  +++a+ kl+g
  Achn303171 199 KKFRGVRRRP-WGRWAAEIRDPT----RrKRVWLGTYDTPEEAATVYDRAAVKLKG 249
                 59********.**********84....34************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF544956.03E-391112IPR016135Ubiquitin-conjugating enzyme/RWD-like
Gene3DG3DSA:3.10.110.103.6E-32166IPR016135Ubiquitin-conjugating enzyme/RWD-like
CDDcd001955.73E-454107No hitNo description
SMARTSM002124.6E-324112No hitNo description
PROSITE profilePS5012722.8554107IPR000608Ubiquitin-conjugating enzyme E2
PfamPF001791.0E-18567IPR000608Ubiquitin-conjugating enzyme E2
Gene3DG3DSA:3.10.110.104.4E-1667112IPR016135Ubiquitin-conjugating enzyme/RWD-like
CDDcd000185.87E-32199259No hitNo description
SuperFamilySSF541711.7E-22200257IPR016177DNA-binding domain
SMARTSM003801.2E-38200263IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-30200258IPR001471AP2/ERF domain
PfamPF008471.9E-13200249IPR001471AP2/ERF domain
PROSITE profilePS5103224.684200257IPR001471AP2/ERF domain
PRINTSPR003671.7E-9201212IPR001471AP2/ERF domain
PRINTSPR003671.7E-9223239IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAAKRISKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP TDSPYSGGVF LVSIHFPPDY  60
PFKPPKVLLS ICSLLTDPNP DDPLVPEIAH MYKTDRGKYE TTARSWTQKV RKDGLTVHNR  120
RSMTSGDSSM AFRRRVVRII LTDADATDSS GDDDKQAVRR VKRLVKEINI NQSPNKLEQS  180
KKRKFRSLGS AGSDAVRRKK FRGVRRRPWG RWAAEIRDPT RRKRVWLGTY DTPEEAATVY  240
DRAAVKLKGP DAVTNFPNVS VTEYAVYVKT DGEGSDNVAA LSPTSVLCYD DLTPFDGFSY  300
GDVDAFGFDI DKPLSLADFA VPENFYGADD LGEEFDLDDF LVDVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4x57_A3e-64110932175Ubiquitin-conjugating enzyme E2 8
4x57_C3e-64110932175Ubiquitin-conjugating enzyme E2 8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196206RRKKFRGVRRR
2204223RRRPWGRWAAEIRDPTRRKR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028078710.12e-91pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046823e-68PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A2R6P6H81e-152A0A2R6P6H8_ACTCH; Pathogenesis-related transcriptional activator like
STRINGXP_009607079.11e-79(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.13e-23cytokinin response factor 3