PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn303171 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 346aa MW: 38628.5 Da PI: 7.4954 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 199 | 249 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +grW+AeIrdp+ r kr++lg+++t+eeAa +++a+ kl+g Achn303171 199 KKFRGVRRRP-WGRWAAEIRDPT----RrKRVWLGTYDTPEEAATVYDRAAVKLKG 249 59********.**********84....34************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54495 | 6.03E-39 | 1 | 112 | IPR016135 | Ubiquitin-conjugating enzyme/RWD-like |
Gene3D | G3DSA:3.10.110.10 | 3.6E-32 | 1 | 66 | IPR016135 | Ubiquitin-conjugating enzyme/RWD-like |
CDD | cd00195 | 5.73E-45 | 4 | 107 | No hit | No description |
SMART | SM00212 | 4.6E-32 | 4 | 112 | No hit | No description |
PROSITE profile | PS50127 | 22.855 | 4 | 107 | IPR000608 | Ubiquitin-conjugating enzyme E2 |
Pfam | PF00179 | 1.0E-18 | 5 | 67 | IPR000608 | Ubiquitin-conjugating enzyme E2 |
Gene3D | G3DSA:3.10.110.10 | 4.4E-16 | 67 | 112 | IPR016135 | Ubiquitin-conjugating enzyme/RWD-like |
CDD | cd00018 | 5.87E-32 | 199 | 259 | No hit | No description |
SuperFamily | SSF54171 | 1.7E-22 | 200 | 257 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-38 | 200 | 263 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-30 | 200 | 258 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-13 | 200 | 249 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.684 | 200 | 257 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-9 | 201 | 212 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-9 | 223 | 239 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MAAKRISKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP TDSPYSGGVF LVSIHFPPDY 60 PFKPPKVLLS ICSLLTDPNP DDPLVPEIAH MYKTDRGKYE TTARSWTQKV RKDGLTVHNR 120 RSMTSGDSSM AFRRRVVRII LTDADATDSS GDDDKQAVRR VKRLVKEINI NQSPNKLEQS 180 KKRKFRSLGS AGSDAVRRKK FRGVRRRPWG RWAAEIRDPT RRKRVWLGTY DTPEEAATVY 240 DRAAVKLKGP DAVTNFPNVS VTEYAVYVKT DGEGSDNVAA LSPTSVLCYD DLTPFDGFSY 300 GDVDAFGFDI DKPLSLADFA VPENFYGADD LGEEFDLDDF LVDVR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4x57_A | 3e-64 | 1 | 109 | 32 | 175 | Ubiquitin-conjugating enzyme E2 8 |
4x57_C | 3e-64 | 1 | 109 | 32 | 175 | Ubiquitin-conjugating enzyme E2 8 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 196 | 206 | RRKKFRGVRRR |
2 | 204 | 223 | RRRPWGRWAAEIRDPTRRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028078710.1 | 2e-91 | pathogenesis-related genes transcriptional activator PTI6-like | ||||
Swissprot | O04682 | 3e-68 | PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A2R6P6H8 | 1e-152 | A0A2R6P6H8_ACTCH; Pathogenesis-related transcriptional activator like | ||||
STRING | XP_009607079.1 | 1e-79 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5227 | 21 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53290.1 | 3e-23 | cytokinin response factor 3 |