PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn301581
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 251aa    MW: 28336.2 Da    PI: 7.5003
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn301581genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.51.1e-32561611100
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k ltpsdv+k++rlv+pk++ae++      +     +  l++edesg+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v+F++++ ++++l+
  Achn301581  56 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgggDRTDSAGLLLSFEDESGKFWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVLFERHRGEGGRLF 154
                 99***************************976333346679************************************************8877****** PP

                 EEEE-SS CS
          B3  94 vkvfrks 100
                 ++++r+s
  Achn301581 155 IGWRRRS 161
                 ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-4051163IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.32E-3152160IPR015300DNA-binding pseudobarrel domain
CDDcd100178.48E-3054159No hitNo description
PfamPF023622.1E-2956161IPR003340B3 DNA binding domain
SMARTSM010191.8E-2656161IPR003340B3 DNA binding domain
PROSITE profilePS5086314.36756161IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEPTPKPPQQ HLLSPPNTHH HPATSFSLNL NHHHDDVDGE ERENPTSLEV NKEPMFEKPL  60
TPSDVGKLNR LVIPKQHAEK YFPLGGGDRT DSAGLLLSFE DESGKFWRFR YSYWTSSQSY  120
VLTKGWSRYV KEKRLDAGDV VLFERHRGEG GRLFIGWRRR SSASAVDGAM MQNQTTPSGN  180
NSKKLVRLFG VNLECQPEHE SEPSTPDGSS TSSQGQAHYH YCTNSHASNT QRDMDVNFSR  240
GVNQMRYHQG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-48511603113B3 domain-containing transcription factor NGA1
5os9_B2e-48511603113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018820040.11e-85PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ26e-70Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A2R6QVX81e-122A0A2R6QVX8_ACTCH; B3 domain-containing protein
STRINGVIT_08s0007g02810.t011e-83(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.13e-72B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]