PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn300761
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family G2-like
Protein Properties Length: 347aa    MW: 38728.1 Da    PI: 8.6029
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn300761genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like408.7e-13306330125
     G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                 kprlrWt+eLHerFv+av+qLGG++
  Achn300761 306 KPRLRWTSELHERFVDAVTQLGGPD 330
                 79*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF511265.5E-4635195IPR011050Pectin lyase fold/virulence factor
Gene3DG3DSA:2.160.20.104.9E-5737194IPR012334Pectin lyase fold
PfamPF010953.0E-3440194IPR000070Pectinesterase, catalytic
PROSITE patternPS005030184193IPR033131Pectinesterase, Asp active site
Gene3DG3DSA:1.10.10.601.9E-11303332IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-8306331IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042545Biological Processcell wall modification
GO:0005618Cellular Componentcell wall
GO:0003677Molecular FunctionDNA binding
GO:0030599Molecular Functionpectinesterase activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MLIHGWYIFT FLSLFVGFGF ANARFHPRFS KRSPTYPTIY VDPSGHGNFS TIQSAIDSIP  60
SNNGKWICIY VKAGEYREQI SIPIDKPFIY LKGEGKRKTN VVWNAYDSIV LSPTFISEAD  120
NIVAKSITFR NSYNNPPTAA NPIRTAVAAK ISGDKSAFYR CGFLGFQDTL WDVQGRHYFK  180
LCTIQGAVDF IFGADINSEN LACPKNLGPC LERDSEDRHN ATSLSCSSLS LTFTLSTYNC  240
LCSRLSYINT RLLTFSGLRA PRTPFSPLSR ENFGDFREKM YSAIHSLPLD GGVGVDACLV  300
MTSDPKPRLR WTSELHERFV DAVTQLGGPD SQYQFLPILS LSRFGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gq8_A1e-20311931161PECTINESTERASE
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109851.12e-92probable pectinesterase 29
SwissprotQ4PSN03e-59PME29_ARATH; Probable pectinesterase 29
TrEMBLA0A2R6PXI61e-139A0A2R6PXI6_ACTCH; Pectinesterase
STRINGXP_009796005.16e-85(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.16e-23G2-like family protein
Publications ? help Back to Top
  1. Markovic O,Janecek S
    Pectin methylesterases: sequence-structural features and phylogenetic relationships.
    Carbohydr. Res., 2004. 339(13): p. 2281-95
    [PMID:15337457]
  2. Louvet R, et al.
    Comprehensive expression profiling of the pectin methylesterase gene family during silique development in Arabidopsis thaliana.
    Planta, 2006. 224(4): p. 782-91
    [PMID:16622707]
  3. Francis KE,Lam SY,Copenhaver GP
    Separation of Arabidopsis pollen tetrads is regulated by QUARTET1, a pectin methylesterase gene.
    Plant Physiol., 2006. 142(3): p. 1004-13
    [PMID:16980565]