PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn299651 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 155aa MW: 17075.9 Da PI: 9.1349 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.3 | 3.3e-17 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ ++ Aa+a++ a +l+g Achn299651 27 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFNLRG 76 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.931 | 27 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-20 | 27 | 85 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-35 | 27 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-11 | 28 | 39 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.50E-26 | 28 | 85 | No hit | No description |
Pfam | PF00847 | 1.6E-10 | 28 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-29 | 28 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-11 | 66 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MESGECCSSS TSPEKRKQRQ NQRDNKPYKG IRMRKWGKWV AEIREPNKRS RIWLGSYSSP 60 VAAARAYDTA VFNLRGPSAR LNFPEFITEE DDLRGGGSGA DLSAASIRKK ATEVGARIDA 120 LETAHHHAPA ESNWGRASVK PDLNEYPGPE SSDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-14 | 26 | 84 | 4 | 63 | ATERF1 |
3gcc_A | 1e-14 | 26 | 84 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018819909.1 | 2e-72 | PREDICTED: ethylene-responsive transcription factor RAP2-1-like | ||||
Swissprot | O22174 | 3e-51 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | A0A2R6Q054 | 1e-110 | A0A2R6Q054_ACTCH; Ethylene-responsive transcription factor | ||||
STRING | VIT_18s0001g10150.t01 | 5e-69 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 1e-46 | DREB and EAR motif protein 3 |
Publications ? help Back to Top | |||
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