PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn299261 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GRF | ||||||||
Protein Properties | Length: 229aa MW: 24731.6 Da PI: 10.0256 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.6 | 6e-25 | 149 | 193 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e Achn299261 149 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEG 193 79****************************************986 PP | |||||||
2 | QLQ | 66 | 8.9e-23 | 79 | 115 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT++Q+++L++Q+l+yKy+ an+PvP++Ll +i+k Achn299261 79 SPFTPSQWMELEHQALIYKYITANVPVPSNLLTPIRK 115 89*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.1E-13 | 79 | 115 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.927 | 80 | 115 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.4E-16 | 80 | 114 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.847 | 149 | 193 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.1E-21 | 150 | 192 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MSFGDESERE RENPETKHKW YGSGFLKEEG PEPKVAKTDV LSANSKAMLR PNSSFLSHGH 60 GYGGLNASSM HGVLSGVRSP FTPSQWMELE HQALIYKYIT ANVPVPSNLL TPIRKALDSA 120 GLSGFSVGPL RSSTLGWGAY HLGYSNNTDP EPGRCRRTDG KKWRCSRDAV VDQKYCERHM 180 NRGRHRSRKP VEGQNGHSVS GTATTTAKPS STSALVVPGG GASNSLGF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002283504.2 | 1e-97 | PREDICTED: growth-regulating factor 1 | ||||
Swissprot | Q6AWY2 | 1e-59 | GRF7_ORYSJ; Growth-regulating factor 7 | ||||
Swissprot | Q6AWY3 | 4e-59 | GRF6_ORYSJ; Growth-regulating factor 6 | ||||
TrEMBL | A0A2R6Q0J5 | 1e-149 | A0A2R6Q0J5_ACTCH; Growth-regulating factor like | ||||
STRING | VIT_18s0001g08650.t01 | 4e-97 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1688 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 1e-58 | growth-regulating factor 1 |
Publications ? help Back to Top | |||
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