PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn299201
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TALE
Protein Properties Length: 358aa    MW: 41221.9 Da    PI: 6.5108
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn299201genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-092853192155
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Achn299201 285 KWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 319
                 669*****************************885 PP
2ELK37.93.7e-13239260122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK++LlrKYsgyL+sLkqE+s
  Achn299201 239 ELKNHLLRKYSGYLSSLKQELS 260
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.8E-2295139IPR005540KNOX1
PfamPF037902.3E-2296137IPR005540KNOX1
SMARTSM012562.6E-28146197IPR005541KNOX2
PfamPF037914.4E-25151195IPR005541KNOX2
SMARTSM011881300155175IPR005539ELK domain
PROSITE profilePS5121311.296239259IPR005539ELK domain
PfamPF037892.5E-10239260IPR005539ELK domain
SMARTSM011883.5E-7239260IPR005539ELK domain
PROSITE profilePS5007112.876259322IPR001356Homeobox domain
SuperFamilySSF466891.33E-19260334IPR009057Homeodomain-like
SMARTSM003891.0E-12261326IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-27264325IPR009057Homeodomain-like
CDDcd000869.50E-12271323No hitNo description
PfamPF059201.3E-16279318IPR008422Homeobox KN domain
PROSITE patternPS000270297320IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEDYRQMSEN TSHRGNFLYG GQVLGPNINI NTNSNNNSFH LHHPSVDYSS DHHSIVKTEA  60
GTSQKFHYPS IIRAHQTDHN QQQHDHHHQS PSDVEAIKAK IISHPHYSNL LEAYMDCQKV  120
GAPPEVAARL AAGREEFEAR QWASVACRDG SKDPELDQFM EAYCDMLVKY REELSRPLQE  180
AMEFMRRIET QLNMLSNGPV RIFTSDEKCE GVGSSEEDQD NSGGETELPE IDPRAEDREL  240
KNHLLRKYSG YLSSLKQELS KKKKKGKLPK DARQKLLSWW ELHYKWPYPS ETEKVALAES  300
TGLDQKQINN WFINQRKRHW KPSEDMQFMV MDGLHPQNAA LYMEGHYMGE GPYRLGP*
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028104929.10.0homeotic protein knotted-1-like
SwissprotQ413301e-173KN1_SOLLC; Homeotic protein knotted-1
TrEMBLA0A2R6Q0L00.0A0A2R6Q0L0_ACTCH; Homeotic protein like
STRINGVIT_18s0001g08380.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49732333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-146KNOTTED-like from Arabidopsis thaliana