PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn299081
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 446aa    MW: 49355.6 Da    PI: 6.2623
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn299081genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2361.8e-11208253755
         AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 r++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Achn299081 208 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 253
                 8999********988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR003675.8E-5163174IPR001471AP2/ERF domain
PROSITE profilePS5103216.529202261IPR001471AP2/ERF domain
SMARTSM003802.2E-27208267IPR001471AP2/ERF domain
PfamPF008472.3E-6208253IPR001471AP2/ERF domain
CDDcd000185.94E-22208263No hitNo description
Gene3DG3DSA:3.30.730.102.2E-15209261IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-15209263IPR016177DNA-binding domain
PRINTSPR003675.8E-5243263IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MAAHQYSSQE REAAMALTLD SLYYHQNPEV HQQEQEIEAQ NNPYYSGLPC NGMLYHSPLE  60
VQTKDTQMAT MDGNWVSGHY SDHHGVVVDG GSGGVGTCGD LQSLSLSMSP GSQSSCVISP  120
STGTDQCNNM AIETKKRGCA IVAQKQPVHR KSIDTFGQRT SQYRGVTSNP FVSTEMKNVE  180
PFWQLENYQQ ELEEMKNMTR QEYVAHLRRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA  240
AEAYDIAAIK FRGVNAVTNF DISRYDVERI MASNTLLASE LAKRNKDREP KTEAIECHHH  300
SSTQNNEELV QPQSNTDNNW KMVSCQSQSP QNPRFDSSLD EKLLCIGNYR NSSFLQDWIG  360
IDSMSAGQAI NDEPAKFGGV HFSNPSSLVT SLSSSREASP DKTGSMLFAK RPPTVGSWIP  420
SAQLRAAAAP ISVAHLPAFA AWNDT*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021284854.11e-162AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z028e-76CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2R6Q0K10.0A0A2R6Q0K1_ACTCH; AP2-like ethylene-responsive transcription factor ANT
STRINGVIT_18s0001g08610.t011e-160(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1749024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-61AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]