PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn298521

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

MYB_related

Protein Properties

Length: 118aa MW: 13376.6 Da PI: 10.4794

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn298521	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.1	4.7e-14	16	66	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ + gg +W+ Ia+ g+ R++k+c++rw +yl Achn298521 16 KGLWSPEEDEKLMNYMMLRNGGqlgCWSDIAKNAGLQRCGKSCRLRWINYL 66 678**********99988889************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-22	10	69	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.44	11	70	IPR017930	Myb domain
SMART	SM00717	2.4E-7	15	68	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.45E-19	18	94	IPR009057	Homeodomain-like
Pfam	PF13921	9.3E-13	19	81	No hit	No description
CDD	cd00167	4.41E-7	19	66	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.3E-8	70	93	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MGKDKVNNNS KTKLRKGLWS PEEDEKLMNY MMLRNGGQLG CWSDIAKNAG LQRCGKSCRL 60 RWINYLRPDL KRGAFSPHEE EIIIHLHSIL GNRLVLSPSL SLAFHSMITK LNNVIKT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269\|PubMed:19808805, ECO:0000269\|PubMed:22197883}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003555035.2	6e-50	transcription factor MYB83
Refseq	XP_028217804.1	6e-50	transcription factor MYB83-like
Swissprot	Q9C6U1	7e-42	MYB83_ARATH; Transcription factor MYB83
TrEMBL	A0A2R6RA86	2e-73	A0A2R6RA86_ACTCH; Transcription factor like
STRING	GLYMA19G05080.1	2e-49	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12870.1	7e-37	myb domain protein 46

Publications ? help Back to Top
Vargas L, et al. Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants. Biotechnol Biofuels, 2016. 9: p. 139 [PMID:27390589] Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism. Plant Physiol., 2017. 174(3): p. 1897-1912 [PMID:28512179]