PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn298021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | SBP | ||||||||
Protein Properties | Length: 364aa MW: 39765.5 Da PI: 7.9563 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 97.2 | 1.5e-30 | 90 | 159 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls+++eyhrrhkvCe+hsk+++v++ g +qr fh+l+efDe+krsCr+rL++hn+rrrk+q+ Achn298021 90 CLVDGCQADLSSCREYHRRHKVCEKHSKTAEVTIGGNKQR-------FHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 159 **************************************97.......7**************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.8E-23 | 86 | 144 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 24.136 | 87 | 157 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.88E-29 | 88 | 162 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.4E-20 | 90 | 156 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MDWNLKTPSW DLSEFEKETS PNIGSVSGSS SYGGQEMKGD FSVDLKLGRV ANVVNESADN 60 LQVPSVPKMV SLPPKRARAV NNGVLQIASC LVDGCQADLS SCREYHRRHK VCEKHSKTAE 120 VTIGGNKQRF HSLEEFDEGK RSCRKRLDGH NRRRRKPQPE PLSRSGSFLS NYQGTRLYPF 180 SNPEVYPTAT LANPTWAGVV TTKQEAKLYN QNLFSGSSSR SHGAEGKQFN FLHGTTLALS 240 NQMVPEASTC QPFHKSVGGH NSREMFCNGL STQVLNSNCA LSLLSSSPLQ TSEIGLSHMV 300 PPSSIPLAHP LGPSLHNSAL ESMDSLLVPN ASDTNVHCQG MFHMGRDSSS ENEASQTLPF 360 CWE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-19 | 90 | 156 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 156 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00555 | DAP | Transfer from AT5G50570 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028125244.1 | 1e-165 | squamosa promoter-binding-like protein 13A | ||||
Swissprot | B9DI20 | 3e-58 | SP13A_ARATH; Squamosa promoter-binding-like protein 13A | ||||
Swissprot | P0DI11 | 3e-58 | SP13B_ARATH; Squamosa promoter-binding-like protein 13B | ||||
TrEMBL | A0A2R6PDL3 | 0.0 | A0A2R6PDL3_ACTCH; Squamosa promoter-binding-like protein | ||||
STRING | EOY22519 | 1e-144 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4920 | 20 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 9e-56 | SBP family protein |
Publications ? help Back to Top | |||
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