PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn296391 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NF-YC | ||||||||
Protein Properties | Length: 1835aa MW: 201625 Da PI: 4.8604 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 174.1 | 1.4e-54 | 1295 | 1398 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvd 94 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvd Achn296391 1295 QLQVFWANQmqdIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVD 1391 89******988889*********************************************************************************** PP NF-YC 95 ivprdel 101 i+prdel Achn296391 1392 IIPRDEL 1398 *****87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd06410 | 1.00E-42 | 180 | 276 | No hit | No description |
SMART | SM00666 | 5.7E-26 | 191 | 278 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.22E-21 | 192 | 280 | No hit | No description |
Pfam | PF00564 | 6.1E-19 | 193 | 277 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.30.200.20 | 1.2E-26 | 934 | 1032 | No hit | No description |
SuperFamily | SSF56112 | 1.52E-78 | 937 | 1210 | IPR011009 | Protein kinase-like domain |
SMART | SM00220 | 1.5E-61 | 948 | 1214 | IPR000719 | Protein kinase domain |
PROSITE profile | PS50011 | 41.955 | 948 | 1213 | IPR000719 | Protein kinase domain |
Pfam | PF07714 | 6.5E-63 | 950 | 1211 | IPR001245 | Serine-threonine/tyrosine-protein kinase catalytic domain |
CDD | cd13999 | 1.86E-111 | 954 | 1211 | No hit | No description |
PROSITE pattern | PS00107 | 0 | 954 | 979 | IPR017441 | Protein kinase, ATP binding site |
PRINTS | PR00109 | 2.0E-12 | 1030 | 1043 | IPR001245 | Serine-threonine/tyrosine-protein kinase catalytic domain |
Gene3D | G3DSA:1.10.510.10 | 5.2E-49 | 1033 | 1229 | No hit | No description |
PRINTS | PR00109 | 2.0E-12 | 1067 | 1085 | IPR001245 | Serine-threonine/tyrosine-protein kinase catalytic domain |
PROSITE pattern | PS00108 | 0 | 1073 | 1085 | IPR008271 | Serine/threonine-protein kinase, active site |
PRINTS | PR00109 | 2.0E-12 | 1138 | 1160 | IPR001245 | Serine-threonine/tyrosine-protein kinase catalytic domain |
PRINTS | PR00109 | 2.0E-12 | 1182 | 1204 | IPR001245 | Serine-threonine/tyrosine-protein kinase catalytic domain |
SuperFamily | SSF47113 | 5.03E-32 | 1287 | 1389 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.9E-36 | 1309 | 1381 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.2E-20 | 1317 | 1380 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
TIGRFAMs | TIGR00820 | 1.4E-114 | 1555 | 1834 | IPR004698 | Zinc/iron permease, fungal/plant |
Pfam | PF02535 | 2.5E-61 | 1559 | 1831 | IPR003689 | Zinc/iron permease |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0071577 | Biological Process | zinc II ion transmembrane transport | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005385 | Molecular Function | zinc ion transmembrane transporter activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1835 aa Download sequence Send to blast |
MEQPKNHDGH QYNRMQPGNE ELESTSQGFM LDPSSCINSN TRPPELRFSE VKPVLNFSIQ 60 TGEEFALEFM RDRVNPKKPF IPNTAGDLNY TPGYLELKGI LGISHTGSES GSDISMLTAV 120 GKGQNEFEQK NSSLYDDKSN YGSVQSVPLT SWDYNSYRGT IQEYSSSGAS ERSSTKIKIL 180 CSFGGRILPR PSDGELRYVG GETRIIRIST DITWQELWQK TGTVYNQTQA IKYQLPGEDL 240 DALVSVSCDE DLQNMMEECN VLQGGEGSRR LRMFLFSLND LEDAHFGLGS CDGDSEIQYV 300 FAVNGMDVGA RNNSNLHGIV SSSGNDLDEL DRQNVERDTG GAATDHVVVS NSQLTSYLVS 360 ATQSSQPILP SFSNTYETPS QLYNGQMMHH GEAKQYPLPC GYDSHLPNHT PFGESSGLLP 420 LHGNTTQKRG LTEGQQSSVL FIQDPQMQVE ELKLKNDASI QQEVGDEIIL PSSKDNHVHA 480 QPLDGDVRDY FLDEEASAVI STLDEELKPL KTEGRHQEPV QVSSPLSAIS HVQVPKADEN 540 VGHSSSGAVT PGYGNSESDP IDLSYLEPPV PSHRVFYSER IPREQAELLN RFSKSDDSLG 600 SQFLINHTHS DLVQQGFITE SVCLETEQPI STEKPLYGDL HTIADGAGKL QNVKQTVSNS 660 IVNEDRILKD ENGTQDKNLP VDETSEAGSE FPAAIQVASV MHGENSARGL PEPEWSDKAD 720 SNFSVNNTQG HDQHSAWMEN FREPSVGVSR CGDILIDIND RFPRDFLSDI FSKAILSEGS 780 SGISPLQQDG AGLSLNIENQ DPKHWSFFQK LAGDEFSRKD VSLIDQDHFG FSSGLPKVEE 840 EEAPISYTFT PLTTGDISLS HLDSQNYSGD RRELPGTIGS DTAVLHSDYS PSQVKFSDGM 900 QFDNFTENSG APDSEYEDGS RNIGLPPLDP SLADIDISSL QIIKNEDLEE LRELGSGTFG 960 TVYHGKWRGT DVAIKRIKKS CFTGRSSEQE RLTIEFWREA EILSKLHHPN VVAFYGVVQD 1020 GPGGTLATVT EYMVDGSLRH VLLRKDRHLD RRKRLIIAMD AAFGMEYLHA KNIVHFDLKC 1080 DNLLVNLKDP SRPICKVGDF GLSKIKRNTL VSGGVRGTLP WMAPELLNGS SNKVSEKVDV 1140 FSFGIVLWEI LTGEEPYANM HYGAIIGGIV NNTLRPSIPS YCDPEWRSLM EQCWAPNPAA 1200 RPSFTEIASR LRVMSATKPN QRTQQQQQQP VVGIVAGAGS LAYASPPYYS APMGTSGAPA 1260 VAVPSPTQPP TSFPTSQHQL AYQHLHHQQQ QQQQQLQVFW ANQMQDIEQT TDFKNHSLPL 1320 ARIKKIMKAD EDVRMISAEA PVIFAKACEM FILELTLRSW IHTEENKRRT LQKNDIAAAI 1380 SRTDVFDFLV DIIPRDELKE EGLGITKATI PLVGSPADSV PCYYVPTRHP AGPTGMIMGQ 1440 PVDQAAMYTG QQPQPPVALM PWPQPQLQQA QQHQNTSRSL RYELTSGRDH QGKHPERVLN 1500 EAVEYGQGKR GRLAAAGLSQ AQDVLTGEDS GNAVVLDCGG FLHPELFASL GCPFGRPRPE 1560 SDIFFMVKAF AAGVILATGF VHILPDAFDN LTSPCLNQDL WGIFPFTGFV AMMSSIGTFM 1620 VDSFATGYYQ RLHLNHNKPQ PQPLQVRING DEERVVPQRA DQAHASAIPA EETDLVRNRI 1680 ISQVLELGVF IHSIIIGISL GASQNPETIK PLLAALSFHQ FFEGMGLGGC ISQAKFKSLS 1740 TTIMVLFFSL TTPVGIATGI AISSVYKEDS PTALTVGGVF NSAAAGILIY MALVDILAAD 1800 FMNPRMQGNG RLQLGANTSL LLGAACMSVL AKWA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ppz_A | 2e-53 | 947 | 1223 | 38 | 307 | Serine/threonine-protein kinase CTR1 |
3ppz_B | 2e-53 | 947 | 1223 | 38 | 307 | Serine/threonine-protein kinase CTR1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1367 | 1373 | RRTLQKN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028062746.1 | 0.0 | uncharacterized protein LOC114266052 isoform X2 | ||||
TrEMBL | A5B005 | 0.0 | A5B005_VITVI; Uncharacterized protein | ||||
STRING | VIT_19s0085g00550.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 3e-72 | nuclear factor Y, subunit C2 |