PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn295821
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 489aa    MW: 54893.9 Da    PI: 8.6546
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn295821genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.5e-13127165948
                      HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      d+ll+ av+++  ++Wk+Ia++++ +Rt+ qc +rwqk+l
       Achn295821 127 DKLLALAVRKFNEKNWKKIAECVP-NRTDVQCLHRWQKVL 165
                      7899********************.************986 PP
2Myb_DNA-binding51.32.7e-16171218148
                      TSSS-HHHHHHHHHHH.HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdav.kqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+ Edel+++++ k++G++ W+ Ia+ ++ gR +kqc++rw+++l
       Achn295821 171 KGPWTKTEDELIIELFsKKHGNHKWSEIAKSLP-GRIGKQCRERWYNHL 218
                      79*************95689999**********.*************97 PP
3Myb_DNA-binding491.4e-15224266145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r +WT+ E++ l +a++ +G++ W++Ia+ +  gRt++++k++w+
       Achn295821 224 RTPWTEKEELELFRAHEIYGNR-WAKIAKFLH-GRTENSIKNHWN 266
                      789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.4E-7120167IPR001005SANT/Myb domain
PROSITE profilePS500907.956126165IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-18127178IPR009057Homeodomain-like
PfamPF002492.0E-11127165IPR001005SANT/Myb domain
CDDcd001671.55E-8133165No hitNo description
SuperFamilySSF466895.47E-19145209IPR009057Homeodomain-like
PROSITE profilePS5129427.069166222IPR017930Myb domain
SMARTSM007177.2E-14170220IPR001005SANT/Myb domain
PfamPF002492.3E-15171218IPR001005SANT/Myb domain
CDDcd001673.14E-14173218No hitNo description
Gene3DG3DSA:1.10.10.603.5E-23179226IPR009057Homeodomain-like
SuperFamilySSF466891.46E-27197279IPR009057Homeodomain-like
SMARTSM007175.6E-16223271IPR001005SANT/Myb domain
PROSITE profilePS5129419.321223273IPR017930Myb domain
PfamPF002493.0E-14224266IPR001005SANT/Myb domain
CDDcd001671.65E-12226266No hitNo description
Gene3DG3DSA:1.10.10.604.3E-20227272IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MRSVQSSDPI LCSNPEIEVR EENRDRNQMI SLSLSDCPTQ IERRVAELYI ASTSRFEARE  60
RAMKEVKESD AETEKTGAAS SDGSNDNSDH EDRKPVSFQG FVFSVFNFSS ICLAAEKIKE  120
KKKILKDKLL ALAVRKFNEK NWKKIAECVP NRTDVQCLHR WQKVLNPDLV KGPWTKTEDE  180
LIIELFSKKH GNHKWSEIAK SLPGRIGKQC RERWYNHLNP EINRTPWTEK EELELFRAHE  240
IYGNRWAKIA KFLHGRTENS IKNHWNCSMK KKKNLYSTSV TISSDPPKPP ACLSSSSNFT  300
FDLTVPRDIH NKKFSVNCVG SGDSNPLKLG YESLHGDNSP IFVKTGQFPS TDSFIGLPLA  360
PVSLDTLNTH TSLDCSSLES VLRSKAMSFK NMPSIIRKRD LRKFSQGSPG SFDGCTSEEN  420
SNSLTNAEKV LLSSGKSRKL ESSVTINSVE KRLEFAFDNV CDKRNVSAES DASGVGHDSD  480
ISVTFSGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-5812627213158MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-5812627213158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028095820.15e-93transcription factor MYB3R-2-like
TrEMBLA0A2R6QS770.0A0A2R6QS77_ACTCH; Myb-related protein like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1748824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.15e-66Homeodomain-like protein