PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn294901
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family BBR-BPC
Protein Properties Length: 272aa    MW: 30231.4 Da    PI: 10.1222
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn294901genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind284.64.5e-871127118301
   GAGA_bind  18 aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlse 116
                 +++   +++++m +iae+da+i e n a+ +k+ a+ e + a +qrd+a+a r+ a+ erd++++al ++ens++ +l+ g    +  k +++  +   
  Achn294901  11 NAFF--MNKKIMHIIAEKDAAIDEMNRAINDKNVALEELNDAIKQRDEAIAARDTAIRERDSAIAALRFQENSMNGTLGGGA--NRAIKRTHHEAH--- 102
                 4444..99****************************************************************9775553333..233333332222... PP

   GAGA_bind 117 pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslDestlPvPvCs 214
                     ++a++           ++++a +++++k++kk++  ++ k+++  k kk +e+ +++v++++    ska+++ ++l  + +v++Dest+ +PvCs
  Achn294901 103 ---IPEAIP--------ISVVSSEAAKSHQTKQRKKKRGVSSSKSPR--KGKKVGEDLNRHVTTDG----SKAQWEAQELgLIGEVNFDESTMSAPVCS 184
                 ...222333........334445555555666666555555555554..55566678888888877....89********55789************** PP

   GAGA_bind 215 CtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                 CtG++rqCYkW nGGWqS+CCttt+S+yPLP++ ++r++R++grKmS+++f++lL++La +Gydls pvDLk++WAkHGtn+++ti+
  Achn294901 185 CTGVPRQCYKWANGGWQSSCCTTTLSMYPLPQMHNKRHSRMGGRKMSGSVFSRLLSRLAVDGYDLSLPVDLKNYWAKHGTNRYITIK 271
                 **************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.4E-1051271IPR010409GAGA-binding transcriptional activator
PfamPF062171.6E-8510271IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MMPQYQVKEV NAFFMNKKIM HIIAEKDAAI DEMNRAINDK NVALEELNDA IKQRDEAIAA  60
RDTAIRERDS AIAALRFQEN SMNGTLGGGA NRAIKRTHHE AHIPEAIPIS VVSSEAAKSH  120
QTKQRKKKRG VSSSKSPRKG KKVGEDLNRH VTTDGSKAQW EAQELGLIGE VNFDESTMSA  180
PVCSCTGVPR QCYKWANGGW QSSCCTTTLS MYPLPQMHNK RHSRMGGRKM SGSVFSRLLS  240
RLAVDGYDLS LPVDLKNYWA KHGTNRYITI K*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028064148.11e-154protein BASIC PENTACYSTEINE5-like
RefseqXP_028064149.11e-154protein BASIC PENTACYSTEINE5-like
RefseqXP_028064150.11e-154protein BASIC PENTACYSTEINE5-like
SwissprotQ8S8C61e-105BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A2R6R6U20.0A0A2R6R6U2_ACTCH; Protein BASIC like
STRINGXP_009804621.11e-124(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92872128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-100basic pentacysteine 4