PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn294801
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TALE
Protein Properties Length: 683aa    MW: 74831.1 Da    PI: 5.7891
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn294801genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.9e-094534901954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Achn294801 453 FEHflHPYPKDSDKSMLARQTGLTRSQVSNWFINARVR 490
                 664459******************************88 PP
2BELL128.42.5e-41315386172
        BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 erq+lq k +kLls+l+eV++rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai++qi
  Achn294801 315 ERQDLQDKLTKLLSMLDEVNRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAITGQI 386
                 799********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-65243384IPR006563POX domain
PfamPF075263.6E-51249383IPR006563POX domain
PROSITE profilePS5007112.293431494IPR001356Homeobox domain
SMARTSM003891.6E-9434498IPR001356Homeobox domain
CDDcd000867.12E-13434495No hitNo description
SuperFamilySSF466894.28E-17435501IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28437500IPR009057Homeodomain-like
PfamPF059204.7E-18451490IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MAPSGVRLNH RFGFWFTDRL GDSKFEAETT MATFFPNSDN QRQGAPMVYL RESLPSSYSE  60
TPVFPGNMMM YMNYLSSSGS DTLAGNSPPN SCNDITPPVG DSVSTPPQQE ILSNNGASRI  120
GEHDFHEWGS SRNEMTFMPP MGSATSLLQG VQNLQGQGLS LSLSTQVPPS MQLPSIEYRN  180
PNSSGLSSFM SPNLLISGEG NGRSVSIRDN ESSENKFPNN TEYMPPGFYS DPMKTDMSSY  240
GMSSIVRTIP NSKYLKAAQQ LLDEVVSVRK ALKQQDAKKD QSKSPKEVDG VSKNGAPSNP  300
QESVSNSPRE LSAAERQDLQ DKLTKLLSML DEVNRRYKQY YHQMQIVVSS FDVIAGCGAA  360
KPYTALALQT ISRHFRCLRD AITGQIRASR RSLGEEDVSE NGKGVGISRL RYVDQHIRQQ  420
KALQQLGMMQ QHAWRPQRGL PESSVSILRA WLFEHFLHPY PKDSDKSMLA RQTGLTRSQV  480
SNWFINARVR LWKPMVEEMY KEETGDAELE SNSSSEAEPK ATKGDISASE DRGEDLQQNS  540
TSEATDVEMV GSTINNTFQS GTLRGAETEY GLVKSNGEQK PGVEDGSFYP GAIVQSNGGS  600
GGFMTTGASY HISELGNFGN GSGVSLTLGL KRFEGGNLPI SVENHHGFVT LRGDDVYNTS  660
SSSVGLQTAD FGNSHLFHDF VA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A7e-17440497158Homeobox protein Meis1
4xrs_B7e-17440497158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028081669.10.0BEL1-like homeodomain protein 7
RefseqXP_028081670.10.0BEL1-like homeodomain protein 7
TrEMBLA0A2R6R6P40.0A0A2R6R6P4_ACTCH; BEL1-like homeodomain protein 7
STRINGEOX979220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102052226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-128BEL1-like homeodomain 7