PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn293411
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 266aa    MW: 30134.2 Da    PI: 6.5254
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn293411genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.85.5e-50271511125
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 l pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLpk + ++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ +++
  Achn293411  27 LLPGFRFHPTDEELVGFYLKQKIQQRSLPI-ELIKQVDIYKYDPWDLPKLACTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSdGTK 124
                 579***************************.89***************8777899***************************************95666 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmhe 125
                  +glkk+Lvfy+gra kg ktdW+mh+
  Achn293411 125 CIGLKKSLVFYRGRAAKGLKTDWMMHD 151
                 7*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5225151IPR003441NAC domain
PROSITE profilePS5100547.70227170IPR003441NAC domain
PfamPF023652.7E-2329150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MIDFGFGREK EENMDEKNES EKMGDVLLPG FRFHPTDEEL VGFYLKQKIQ QRSLPIELIK  60
QVDIYKYDPW DLPKLACTGE KEWYFYCPRD RKYRNSARPN RVTGAGFWKA TGTDRPIYSS  120
DGTKCIGLKK SLVFYRGRAA KGLKTDWMMH DGFSALDIPS YKPINPTVHK TSPFTVPNGD  180
VSASFMFSPI ETPGPAMLFN LSPTLIGEAS KTYESIDFEG SQQHFDSFSI GSPQDIQGNI  240
RTISFPFSLP DAWKPNLPWD SPLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-482715115137Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458499.11e-101PREDICTED: putative NAC domain-containing protein 94
SwissprotQ9FIW58e-82NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLA0A2R6RYU61e-107A0A2R6RYU6_ACTCH; Protein FEZ like
STRINGGorai.012G054800.14e-99(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22022262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.13e-84NAC domain containing protein 94