PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn292811
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family CO-like
Protein Properties Length: 376aa    MW: 41762.7 Da    PI: 6.0478
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn292811genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.23.9e-0961105341
    zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                  ++C+ +e+ ++ + C+ +   lC +C   +H+       H +vp
  Achn292811  61 VWVCEACERAPAAFLCKADAASLCSSCDADIHSAnplarrHHRVP 105
                 689*****************************6688999977776 PP
2CCT69.86.7e-24306349144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Achn292811 306 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 349
                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.1581663IPR000315B-box-type zinc finger
SMARTSM003364.4E-61663IPR000315B-box-type zinc finger
CDDcd000211.57E-51963No hitNo description
PROSITE profilePS5011911.03559106IPR000315B-box-type zinc finger
PfamPF006434.1E-760105IPR000315B-box-type zinc finger
CDDcd000211.87E-862106No hitNo description
SMARTSM003361.1E-764106IPR000315B-box-type zinc finger
PROSITE profilePS5101716.648306348IPR010402CCT domain
PfamPF062037.3E-18306348IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MLKEESSTVL DEGNNNWARA CDTCLSAACT VYCRAESAYL CSGCDARIHS ANRVASRHER  60
VWVCEACERA PAAFLCKADA ASLCSSCDAD IHSANPLARR HHRVPVLPIT GCLYGPPAGS  120
SLADPASDDG FLTQEADDQD EASSWLLLNP VKNITNQNGN GFLFGGEVVD DYLDLEEYNS  180
CQENQFTEQY NQQQQQYGIV SQKSFGGDRV VPVQCGDIKG QLHHHQQQQH HNYQLEMMEY  240
ESPKTGYGYP ASISHSVSVS SMDVGVVPDS TMSDISISHP RPPKGTIELF SGPPIHMTTQ  300
LTPMDREARV LRYREKKKTR KFEKTIRYAS RKAYAETRPR IKGRFAKRTE LEVEVDQMFN  360
TALMAECGYG IVPSF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022759198.10.0zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-142COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A2R6RYG60.0A0A2R6RYG6_ACTCH; Zinc finger protein like
STRINGXP_002532886.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-101CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]