PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn292201
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 676aa    MW: 73528.8 Da    PI: 6.8198
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn292201genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-07270290526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+ f++ G C  Gd+C +aHg
  Achn292201 270 PCPEFRK-GACAKGDSCEYAHG 290
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127962.5E-873145IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.3E-1674198IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.0E-1475162IPR020683Ankyrin repeat-containing domain
SMARTSM002480.003177107IPR002110Ankyrin repeat
PROSITE profilePS5029716.28277186IPR020683Ankyrin repeat-containing domain
CDDcd002049.19E-1579186No hitNo description
SMARTSM002480.0087112144IPR002110Ankyrin repeat
PROSITE profilePS5008811.247112147IPR002110Ankyrin repeat
SMARTSM003563.8E-4265291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4269291IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-5270290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.643270292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4297328IPR000571Zinc finger, CCCH-type
SMARTSM0035688300323IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.465300324IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MCRGSKSKLN PSYLTMEGGE NQEHRNGVFS ETSLLLELAA SDDFGSFKFA VEDEGLGLDE  60
ASLWYGRRIG SKKMELEERT PLMIASMYGS TEVLKYIIGT GTVDVNRACG SDGATALHCV  120
ASGGSGSSVE VVKLLLDASA DANSVDANGN KPGDLIAPSF NSSSNLRRKM LEMLLKGANT  180
VSIDQNTSQE VNPIPQLAKA GIEKKEYPID VLLPDINNGV YSTDEFRMYS FKVKPCSRAY  240
SHDWTECPFV HPGENARRRD PRKYHYTCVP CPEFRKGACA KGDSCEYAHG VFESWLHPAQ  300
YKTSLCKDEI GCSRKVCFFA HRAEELRPLY ASTGSALPSP KSLSSGAVDM AMLNPMALGS  360
SAMLMPPTST PPMSPVACSS PMGGNLWVNK VNLILTPPSL QLPGSRLKTA SNSRDLELEM  420
ELLGFERLRN QQRQQLIEEL SGLSSPYSKI GELKPSNLDD VFGSLDPSLL YQFQGLSPKV  480
STTTTTTQLQ SPTAHQMRQN MNQLRSSYPT NLSSSPVRKT PINGFDSSGA VMNSRMAAFT  540
KRSQSFIDRG AVNHHRPGGL AFTAAANSAS MMSSNLSDWS SPDGKLDWGF HGEEHNKLKK  600
SASFRFQSGN GSKPQSAMAP SSLDEPDVSW VHSLVKDGSS VGAGLYSSDH RHGGFNETLP  660
PWVEQLYIEQ EQIMA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028067511.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2R6RR830.0A0A2R6RR83_ACTCH; Zinc finger CCCH domain-containing protein
STRINGEOY177610.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-177C3H family protein