PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn291181
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 268aa    MW: 28712.4 Da    PI: 9.1644
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn291181genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.3e-105074327
                S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                   C +++r+G+C yG +C+F+H++
  Achn291181 50 VTDCAYYLRSGFCGYGIKCRFNHPR 74
                568********************96 PP
2zf-CCCH39.41e-12216241126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ++++ C+++++tG Ck+G +C+F+H+
  Achn291181 216 PGQPDCQYYLKTGDCKFGTSCRFNHP 241
                 5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.1E-54774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0754775IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-75074IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-65075IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-55374IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6215242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554215243IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9217241IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5220242IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-5221240IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEVYGRSAER NGSDREVEQG PAGPGKGLEE SMRRLDLWNR EFQYPERSGV TDCAYYLRSG  60
FCGYGIKCRF NHPRDRSSVG GAVRNGGGEF PERPGEPACQ TVQSSSIPSP HQYRGPLTSY  120
RIGRPPIFPG SYAPSAYGPL LLPPGVVPIP GWSTYSAPVS PVLSPSAQPT VGVGSLYGVS  180
QLSSSAPGLV GQYPSFKSSG VPSINGQKEI NFPKRPGQPD CQYYLKTGDC KFGTSCRFNH  240
PLAWVIPNTK CVLSPLGLPL RPGVTVT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028124636.11e-101LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W912e-67C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2R6P5W81e-152A0A2R6P5W8_ACTCH; Zinc finger CCCH domain-containing protein
STRINGVIT_07s0104g01460.t011e-91(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.24e-52C3H family protein