PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn291121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | HB-other | ||||||||
Protein Properties | Length: 261aa MW: 28651.7 Da PI: 6.0262 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 20.4 | 8.5e-07 | 69 | 125 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +e+++ g+t +qV+ +F +R++ +k Achn291121 69 KRPRDLLNPKAVKYMQSVFSIKDAISKKESREISALFGVTVTQVRDFFTSQRIRVRK 125 799***************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.556 | 66 | 126 | IPR001356 | Homeobox domain |
SMART | SM00389 | 0.0035 | 68 | 130 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.59E-7 | 68 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.53E-5 | 69 | 125 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-6 | 69 | 131 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MEVLKDNQLD LAVYESKPSF QGLLDSQQEL LHSQIDHLHN IVFTQCQLTG VNPLSQEMAA 60 GALSIKIGKR PRDLLNPKAV KYMQSVFSIK DAISKKESRE ISALFGVTVT QVRDFFTSQR 120 IRVRKFVRLS RDRALRSNAS KEALMNTDPS MPSGLVQDGV PMNTDPLMTS GLVQHGIPMN 180 TDPAMPTGLL QDVVPMNTDP TIPIYPVPLN CVGSSSSGGG PSCSTQEETL PGLDESDRHF 240 VDNIFSFMRK EETFSGQVLN * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM450469 | 2e-37 | AM450469.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X023104.10, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028085275.1 | 1e-108 | homeobox protein LUMINIDEPENDENS isoform X2 | ||||
TrEMBL | A0A2R6P5W7 | 0.0 | A0A2R6P5W7_ACTCH; Homeobox protein like | ||||
STRING | XP_008451616.1 | 7e-89 | (Cucumis melo) | ||||
STRING | XP_006444261.1 | 7e-89 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5240 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02560.2 | 2e-67 | HB-other family protein |