PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn289001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 29846.5 Da PI: 7.3453 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.9 | 1.3e-19 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++vk++G g+W+++ar g++R +k+c++rw +yl Achn289001 21 KGPWTAEEDSLLIEYVKLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 68 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.5 | 1e-15 | 74 | 118 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++ +G++ W++Iar ++ gRt++++k++w+++ Achn289001 74 RGQITPHEENIILQLHASWGNR-WSAIARSLP-GRTDNEIKNYWRTH 118 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.508 | 16 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.36E-31 | 18 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-17 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-18 | 21 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-24 | 22 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.84E-12 | 23 | 68 | No hit | No description |
PROSITE profile | PS51294 | 19.638 | 73 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-15 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 74 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 76 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.44E-10 | 78 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MSWEMMADHL AWGVIEEGWR KGPWTAEEDS LLIEYVKLHG EGRWNSVARL AGLKRNGKSC 60 RLRWVNYLRP DLKRGQITPH EENIILQLHA SWGNRWSAIA RSLPGRTDNE IKNYWRTHFK 120 KKANSNSSPD ANEKAKARML KRQQFQHQQH HHHHHHHHHQ NQQLMDELDM KKFMSLLDEN 180 ENRVSSLPQA RQDTVTLYPN DTAGEEQGTF YPLLNSYMAL PEATHEENIL WDGMWNLDDV 240 HGNFSMACAL ATPFC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-26 | 21 | 123 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM474331 | 3e-33 | AM474331.1 Vitis vinifera contig VV79X001023.3, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021291303.1 | 1e-119 | transcription factor MYB2-like isoform X2 | ||||
TrEMBL | A0A2R6S0Z7 | 1e-169 | A0A2R6S0Z7_ACTCH; Transcription factor like | ||||
STRING | EOY06237 | 1e-115 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 5e-84 | myb domain protein 305 |