PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn288411
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family E2F/DP
Protein Properties Length: 476aa    MW: 52929.9 Da    PI: 6.592
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn288411genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP25.22.7e-08150201756
     E2F_TDP   7 rlltqkflkllekseegivtlnevakeLvse....dvknkrRRiYDilNVLeal 56 
                 +llt+kf++l++++e+gi++ln++a++L +e    ++  + RR+ D + V++a 
  Achn288411 150 GLLTKKFINLIKHAEDGILDLNNAAETLEEEveklSM--EERRLDDRIRVMNAA 201
                 589*************************444885555..9******99999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.0E-5150201IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd146601.56E-44177298No hitNo description
PfamPF164216.6E-27211296IPR032198E2F transcription factor, CC-MB domain
SuperFamilySSF1440746.8E-26211298No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MQHRSYLPRG IELKLAGPIS VVPTASNKTA AQKKKAAEGT GSSQQLPLWS MKQPFVPHED  60
YHRFSSSDDT RRIDQVAEAI VVKSLQLKRK SGTKYNEVGP SDWSSGPGCT DMVNSPLRTP  120
VSGKGGRVHG RSKVSKSNRS GPLTPMSDAG LLTKKFINLI KHAEDGILDL NNAAETLEEE  180
VEKLSMEERR LDDRIRVMNA ATLRRLDLLT LTDCCREMQE RLRDLSEDEN NQRWLFVTEE  240
DIKGLPCFQN ETLIAIKAPH GTTLEVPDPD EAVDYPQRRY RIILRSTMGP IDVYLVSQFE  300
EKFEDMNSVE PSMSFPIASS SGSNENPATE LTTVVSGWVE VEPQAQYSHR MSSDPNLSHD  360
YPGGIRKIVP SDIDMQTLVL RTCGRQIVSS HKIFFISFFF LVSTAGVEWD GVDVLREEFG  420
MADIDTPQPQ PPPSCAVNVP SAAANLKQRV DHARHMLKFK GNGGGQLNNR ARPFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5tuv_B3e-1317729813111Transcription factor E2F5
5tuv_E3e-1317729813111Transcription factor E2F5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028074977.11e-177transcription factor E2FA
TrEMBLA0A2R6QVU70.0A0A2R6QVU7_ACTCH; Transcription factor E2FA like
STRINGVIT_08s0007g02510.t011e-150(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10772484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.12e-77E2F transcription factor 3