PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn287951 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GRAS | ||||||||
Protein Properties | Length: 522aa MW: 59140.3 Da PI: 4.7562 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 119.2 | 5.2e-37 | 150 | 520 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 v+l+ + eav++++ ela+ + +r++e++sp g m+Rl y+ + L ++ +++s ++ aa+k+f+e++P+ kf+h++aN Achn287951 150 VHLVKAYGEAVDTEQRELAKVIAERIRERVSPVGGVMERLLCYLFQPLDKQACY----------LKQES---GKNFHAAFKAFYEIFPYGKFAHFAANL 235 677888889***************************************999887..........34444...7888999******************** PP GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledl..el 191 Il+a+ ++ e +HiiDfd++ G+QW ++++a+ ++ ++++T ++ +e + + + eet++ L + A+++g+++ + + +l+dl ++ Achn287951 236 EILKALPHDvEVIHIIDFDMGAGIQWSSMIEAIRG---QQREIKLTSIKWSEGDyncdpTRWRFEETKRWLCDHARTFGLKLTVDSM---KLHDLvsKI 328 ******9998899******************9965...5678*******97777999988999**********************97...677772244 PP GRAS 192 eeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvksl..........sPkvvvvveqe..adhnse.sFlerflealeyysalfdslea 273 ++++ + + la n+++ l ++ v +++ +e+L + k+l + ++++ + a+ ns sF + l ++ al++s+e Achn287951 329 KKMK--KnggrRKWLAFNCMVGLPHMG--MVRSRKDVSEFLGAAKELlaytaifgcnNTGIITLGYGDtwAESNSYsSFGSFLDGHLVHCQALLESMEW 423 4444..24477999************8..6666666899******99333333333344555555544445554443666666678************* PP GRAS 274 klpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLv 368 ++p e+r+ +E l+ +v+ +a +++ e+ k + + +G++ ++ ++ +ak ++r + + y+++ e+++++vl W + pLv Achn287951 424 TFPIRLgEARTALEC-LFVAPLVSSIARIHKQ--EE----TKCFDVQSGFGLEGWQVCKESLVEAKEMVRAGE-NLYELKiegENNNCMVLKWGEIPLV 514 ***999455555555.5666666677766665..22....233455678999999999999*******99988.55777666899************** PP GRAS 369 svSaWr 374 vS+Wr Achn287951 515 RVSCWR 520 *****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 16.23 | 123 | 521 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-34 | 150 | 520 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence Send to blast |
MQPDFLQYSS WSSFSNRNSS LDEFDDGLFM DSTVDHYEFS PSFTISDDSD NSIISIFPST 60 SPDQLMKLPV LAETDFSIAL DDFVIEDMPE PLEESEKSCP SQWFSMDGED GWSLSSPVNS 120 SDKSMDMSLI HASLTLPTED MELGNELRLV HLVKAYGEAV DTEQRELAKV IAERIRERVS 180 PVGGVMERLL CYLFQPLDKQ ACYLKQESGK NFHAAFKAFY EIFPYGKFAH FAANLEILKA 240 LPHDVEVIHI IDFDMGAGIQ WSSMIEAIRG QQREIKLTSI KWSEGDYNCD PTRWRFEETK 300 RWLCDHARTF GLKLTVDSMK LHDLVSKIKK MKKNGGRRKW LAFNCMVGLP HMGMVRSRKD 360 VSEFLGAAKE LLAYTAIFGC NNTGIITLGY GDTWAESNSY SSFGSFLDGH LVHCQALLES 420 MEWTFPIRLG EARTALECLF VAPLVSSIAR IHKQEETKCF DVQSGFGLEG WQVCKESLVE 480 AKEMVRAGEN LYELKIEGEN NNCMVLKWGE IPLVRVSCWR S* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028057264.1 | 0.0 | nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A2R6RRQ4 | 0.0 | A0A2R6RRQ4_ACTCH; Nodulation-signaling pathway 2 protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5361 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 1e-19 | GRAS family protein |