PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn287301
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 733aa    MW: 80317.5 Da    PI: 6.3399
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn287301genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS412.53.8e-1263597182374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lLl+cAe+v+++++e+a+++L ++s+l++p g++ qR+aayf eA++arl++s+ ++y +lp++ +++   ++ ++a+++f+ +sP++kfsh+taNq
  Achn287301 359 LTLLLDCAEVVAADNFEEANKMLIEISQLSTPFGTSAQRVAAYFSEAMSARLVNSCLGMYGTLPSRVAPQ-YNQKLASAFQVFNGISPLVKFSHFTANQ 456
                 579************************************************************9999985.567788999******************* PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                 aI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fA++lg+pfef + +++++ +l++e+L+++++
  Achn287301 457 AIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGT----SMEALEATGKRLSDFAHKLGLPFEFFP-IVEKVGNLDPERLNMSNR 550
                 *************************************************....***************************.799*************** PP

        GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                 Ea+a+++    h+l+d + s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl +++++e++er++vE++ll+rei+n++
  Achn287301 551 EAVAIHWLQ--HSLYDITESDTN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGESYGEENDERHVVEQQLLSREIRNIL 642
                 *******99..888866666666....**********************.899********************************************** PP

        GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 a  g +r  + +++++Wre++e++GFk v+l  +a++qa lll +++sdgy++ ee+g+l lgWkd  L+++SaWr
  Achn287301 643 AVGGLSRSGEVNKFNNWREKFEQSGFKGVSLAGNATAQATLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWR 718
                 ***************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.864332698IPR005202Transcription factor GRAS
PfamPF035141.3E-123359718IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MSVFGLLGDN GGHGHAHSNR ANGIRTRESP LTSAFCSSIT VNPLSSHHQA AADGKMVRKR  60
AASEIEQIHN NRFIRPLVAP PDCIGCPFLP LTASNNSIIP AGDNPHFNHS TIQASLPNLS  120
ATPRASGHGF STTSLAYLDP QLSPHHHHPD PDPDPDPSVC VFSGLPLFPS ERRRNSGNNA  180
PVEALPAPTA ADVAAMEDTT MATAWIDAIV KDLIHSSTPH VSISLLIHNV REIIHPCNPH  240
LAALLEYRLR SLVTPSDPAQ TQHHEHQPPP DFPYLSLPDS AATNLHFLNQ QSPQPQAQQL  300
QRPKQQQDSS PSHDLVATTT THEPALAAAA PPTSITSTRE KEKEEMRRQK RDEEGLHLLT  360
LLLDCAEVVA ADNFEEANKM LIEISQLSTP FGTSAQRVAA YFSEAMSARL VNSCLGMYGT  420
LPSRVAPQYN QKLASAFQVF NGISPLVKFS HFTANQAIQE AFEREDRVHI IDLDIMQGLQ  480
WPGLFHILAS RPGGPPFVRL TGLGTSMEAL EATGKRLSDF AHKLGLPFEF FPIVEKVGNL  540
DPERLNMSNR EAVAIHWLQH SLYDITESDT NTLWLLQRLA PKVVTVVEQD LSHAGSFLGR  600
FVEAIHYYSA LFDSLGESYG EENDERHVVE QQLLSREIRN ILAVGGLSRS GEVNKFNNWR  660
EKFEQSGFKG VSLAGNATAQ ATLLLGMFPS DGYTLVEENG ALKLGWKDLC LLTASAWRPI  720
PTFHYPINSL AS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.03437194380Protein SCARECROW
5b3h_A0.03437193379Protein SCARECROW
5b3h_D0.03437193379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028085361.10.0protein SCARECROW-like
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A2R6RRY30.0A0A2R6RRY3_ACTCH; Protein SCARECROW like
STRINGVIT_08s0056g00050.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA82582430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein