PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn286831 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C3H | ||||||||
Protein Properties | Length: 204aa MW: 21321.1 Da PI: 8.6913 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.4 | 4.4e-07 | 2 | 23 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+ + C++Gd+C+FaHg+ Achn286831 2 CNKYNTAEGCRFGDKCHFAHGE 23 999999999***********96 PP | |||||||
2 | zf-CCCH | 39 | 1.4e-12 | 169 | 193 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +fa+ GtC +G+rC+FaHg Achn286831 169 FKTKLCENFAK-GTCTFGERCNFAHG 193 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 13 | 1 | 23 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-10 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.033 | 1 | 24 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-6 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.022 | 2 | 22 | No hit | No description |
SuperFamily | SSF54791 | 4.71E-13 | 62 | 143 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.7E-13 | 70 | 140 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.4E-8 | 71 | 141 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 13.02 | 72 | 136 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 2.8E-9 | 74 | 138 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.67E-11 | 76 | 136 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-16 | 164 | 199 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-9 | 167 | 199 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-7 | 168 | 194 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.009 | 168 | 195 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-10 | 169 | 193 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MCNKYNTAEG CRFGDKCHFA HGEWELGKPM MPSYEDPRGM GPMAGGRFSG RMEPTPAAAP 60 PNPAAAAGFG ASATAKISVD GSLAGAIIGK GGVNSKRVCR VTGAKLSLRD HESDPSLKNI 120 ELEGTFDQIG QASAMVRELI VNINSSASGP PMRYNPGKQQ GSAPPANNFK TKLCENFAKG 180 TCTFGERCNF AHGADDLRKQ PGA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083138.1 | 4e-98 | zinc finger CCCH domain-containing protein 44-like | ||||
Swissprot | Q69XQ3 | 2e-78 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A2R6QTS3 | 1e-146 | A0A2R6QTS3_ACTCH; Zinc finger CCCH domain-containing protein | ||||
STRING | cassava4.1_012715m | 7e-92 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA845 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-54 | C3H family protein |