PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn286101
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TALE
Protein Properties Length: 667aa    MW: 72511.7 Da    PI: 7.851
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn286101genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.2e-093694061954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Achn286101 369 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 406
                 554459******************************88 PP
2BELL1201.1e-38231302172
        BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 erqe+q+kkakL+++l+eV++rY+qy++q+q+vis Fe++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi
  Achn286101 231 ERQEIQMKKAKLINMLDEVEQRYRQYHHQMQIVISWFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQI 302
                 79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.0E-65156300IPR006563POX domain
PfamPF075261.1E-49161299IPR006563POX domain
PROSITE profilePS5007112.05347410IPR001356Homeobox domain
SMARTSM003894.2E-10350414IPR001356Homeobox domain
CDDcd000862.11E-12350411No hitNo description
SuperFamilySSF466895.13E-17351416IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-29353416IPR009057Homeodomain-like
PfamPF059202.6E-18367406IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MGTYFHGNSE IQGDGLQTLI LMNPSYVNYS DEQPPPPPPA GNFVFLNSAA GNSINPQNFH  60
HAPQNQTQQF VGIPLSADPH HPSVHHHQHE ISAVHGFIPR VPYNIYSSSI DHITAAREAP  120
RTQQGLSLSL SGGGGDEVRV SGGSPSPASG ISNGVKGVQS VLLSSKYLKA AQELLDEVVN  180
VGKGLKSESG KGFLTNGQSK ATGESAAAAG EGESGGEISM TRGGGELTTA ERQEIQMKKA  240
KLINMLDEVE QRYRQYHHQM QIVISWFEQA AGIGSARTYT ALALQTISKQ FRCLKDAITG  300
QIRAASKSLG EEDCFGGGKT EGGSRLKFVD HQIRQQRALQ QLGMIQPNAW RPQRGLPERA  360
VSVLRAWLFE HFLHPYPKDS DKIMLAKQTG LTRSQVSNWF INARVRLWKP MVEEMYLEET  420
KEQEQNGSEG KTSEGGNNED SSPKSNSQKS PVTEKQNRSF KSKQENPTNR NTPSPISVST  480
ASTSPNGISI RNQPGFTLIG SPVMEGFGQG SPKKQKSTEI LQSPNSFSSR QVNVKPGEAN  540
TEQFSMRFGD ERERRDGGFT LMGAPTNFIG GFGSYSIGEI SRFGAEQYPY SGNGVSLTLG  600
LPHCENLAMS GTHQTFLPNQ TVEIGEANEF GTINTPTSSH STSVYESINI QNRKRFAAQL  660
LPDFVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16356414563Homeobox protein Meis2
3k2a_B3e-16356414563Homeobox protein Meis2
4xrs_A3e-16356413158Homeobox protein Meis1
4xrs_B3e-16356413158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868214.10.0BEL1-like homeodomain protein 1
RefseqXP_015868215.10.0BEL1-like homeodomain protein 1
RefseqXP_015868216.10.0BEL1-like homeodomain protein 1
RefseqXP_015868217.10.0BEL1-like homeodomain protein 1
RefseqXP_015868218.10.0BEL1-like homeodomain protein 1
RefseqXP_015900418.10.0BEL1-like homeodomain protein 1
RefseqXP_015900419.10.0BEL1-like homeodomain protein 1
RefseqXP_015900420.10.0BEL1-like homeodomain protein 1
RefseqXP_015900421.10.0BEL1-like homeodomain protein 1
RefseqXP_015900422.10.0BEL1-like homeodomain protein 1
RefseqXP_015900424.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-172BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A2R6R7P50.0A0A2R6R7P5_ACTCH; BEL1-like homeodomain protein
STRINGEOY084860.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14782467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-155BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]