PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn285541
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 552aa    MW: 60386.5 Da    PI: 4.8453
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn285541genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS454.56.6e-1391845491374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv++L++cAeav+s+d++la+al++++  la +++ +m+++a+yf+eALa+r++r        l p+e++    s+ l++  +f+e++P+lkf+h+ta 
  Achn285541 184 LVHTLMACAEAVQSDDAKLAEALVKQIGFLAVSQAGAMRKVATYFAEALARRIYR--------LYPQESA---FSDLLQM--YFYEACPYLKFAHFTAD 269
                 689****************************************************........6677776...5666555..6**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p+ ++++ l+e+g++La+fAe+++v+fe++ +va++l+dl+ ++L++++
  Achn285541 270 QAILEAFSNKKRVHVIDFSMKQGMQWPALMQALAVRPGGPPTFRLTGIGPPSLDNSDHLQEVGWKLAQFAETIHVEFEYRGFVANSLADLDASMLDLRE 368
                 *************************************************************************************************** PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak.....lpres...eerikvErel 289
                 gEa+aVn+v++lh+ll++++ +e+    vL++vk+++P++v+vveqe++hn++ Fl+rf+eal+yys+lfdsle       lp+ s   ++++++ +++
  Achn285541 369 GEAVAVNSVFELHKLLARTGGIEK----VLSVVKEMKPEIVTVVEQEVNHNGPVFLDRFTEALHYYSTLFDSLEGCgggsgLPSPSavsNQDKVMTEMY 463
                 **********************99....*********************************************877678887766666799******** PP

        GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 lgr+i+nvvac g +r+erhetl++Wr+r+ +aGF+pvpl+++a kqa++ll+ ++ +dgy+vee+ g+l+lgW++rpL+++SaW+
  Achn285541 464 LGRQICNVVACDGPDRVERHETLAQWRNRFASAGFEPVPLGSNAFKQASMLLALFNgGDGYKVEENGGCLTLGWHTRPLIATSAWK 549
                 *************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.2E-3336103IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.5E-3236109No hitNo description
PROSITE profilePS5098568.971158528IPR005202Transcription factor GRAS
PfamPF035142.3E-136184549IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MKRELHGPLP PPNQAAYGGV GSSSAGKGKM WEENDDELLA VLGYNVKASD MNEVAQKLEH  60
LEEVMGQAQE DGLTHLASES VHYNPSDLSS WLESMISELN PLPDFENPSS LPPLPPPPPI  120
DDSFFEDSKS EYDLKAIPGK ALYPQIPPPN KRLKPTSASP SSSLSIDSAR PVVLVDSQEN  180
GIRLVHTLMA CAEAVQSDDA KLAEALVKQI GFLAVSQAGA MRKVATYFAE ALARRIYRLY  240
PQESAFSDLL QMYFYEACPY LKFAHFTADQ AILEAFSNKK RVHVIDFSMK QGMQWPALMQ  300
ALAVRPGGPP TFRLTGIGPP SLDNSDHLQE VGWKLAQFAE TIHVEFEYRG FVANSLADLD  360
ASMLDLREGE AVAVNSVFEL HKLLARTGGI EKVLSVVKEM KPEIVTVVEQ EVNHNGPVFL  420
DRFTEALHYY STLFDSLEGC GGGSGLPSPS AVSNQDKVMT EMYLGRQICN VVACDGPDRV  480
ERHETLAQWR NRFASAGFEP VPLGSNAFKQ ASMLLALFNG GDGYKVEENG GCLTLGWHTR  540
PLIATSAWKL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6917954814378Protein SCARECROW
5b3h_A2e-6917954813377Protein SCARECROW
5b3h_D2e-6917954813377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5886520.0KF588652.1 Actinidia deliciosa GA repressor DELLA (RGL1b) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028067857.10.0DELLA protein GAI1-like
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLV5QMU10.0V5QMU1_ACTDE; GA repressor DELLA
STRINGVIT_01s0011g05260.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21262462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein