PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn285301
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family CPP
Protein Properties Length: 462aa    MW: 50343.7 Da    PI: 6.8532
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn285301genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.29.1e-1575114242
         TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                 ++k+CnCk+skClk+YCeCfa+g +C+  C+C +C+N+ e+
  Achn285301  75 KQKQCNCKHSKCLKLYCECFASGIYCDG-CNCVNCHNNVEN 114
                 89**************************.********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.3E-1774114IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163417.36575153IPR005172CRC domain
PfamPF036388.8E-1276111IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MNLTSRIRDY CTYRWMLMEK GEGGDFPLKK LARQLDFTED PAAAVLPEHP QPPPPQSPKA  60
QSRTNVEVKD GTPKKQKQCN CKHSKCLKLY CECFASGIYC DGCNCVNCHN NVENEAARRE  120
AVEATLERNP NAFRPKIANS SHGSRDNKCI DCKNFEGSEE RQALFHTDQA NNMAYIQQAA  180
NAAITGAVGS SGYGSPPVSK KRKGQELFYG PTAKDQSIHR LAHFQLANHM KASAHSASLS  240
SVPVMHASNG APLGPAKFTY RSLLADIIRP QDLKELCSVL VVFSEEVAKT LADQRNAIEM  300
QAEDRVESSA APSAQDRVQI PKESETEKEV VEDCSSGNNA EKISPCEFNS DGADVSKGRP  360
MSPGTLALMC DEQDALFMAG SSPKGLMGNG CNTSSQLLHG QGVSEVYAEQ ERVVLTKLRD  420
CLNRLITLGE IKETKCSSLA RTNSGDQKEP LCNSIPITRP E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-13671662132Protein lin-54 homolog
5fd3_B2e-13671662132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142821e-46AC214282.1 Populus trichocarpa clone POP018-K04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028077343.10.0protein tesmin/TSO1-like CXC 5 isoform X1
RefseqXP_028077344.10.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-149TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2R6R4F60.0A0A2R6R4F6_ACTCH; Protein tesmin/TSO1-like
STRINGXP_006451190.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-122Tesmin/TSO1-like CXC domain-containing protein