PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn284751
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 552aa    MW: 60707.7 Da    PI: 5.3438
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn284751genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS454.56.7e-1391845491374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv++L++cAeav+ +d +la+al++++  la +++ +m+++aayf+eALa+r++r        l p+++     s+    + +f+e++P+lkf+h+taN
  Achn284751 184 LVHTLMACAEAVQRDDVKLAEALVKQIDLLAVSQAGAMRKVAAYFAEALARRIYR--------LYPQDSV---FSDL--LQMYFYETCPYLKFAHFTAN 269
                 689****************************************************........4444443...4444..4457**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p++++++ l+e+g++La++Ae+++v+fe++ +va++l+dl+ ++L++++
  Achn284751 270 QAILEAFSNKKRVHVIDFSMKQGMQWPALIQALALRPGGPPTFRLTGIGPPSHDNSDHLQEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLDLRE 368
                 *************************************************************************************************** PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak.....lpres...eerikvErel 289
                 gEa+aVn+v++lh+ll++++ +e+    vL++vk+++P++v+vveqea+hn++ Fl+rf+eal+yys+lfdsle       lp+ s   ++++ + +++
  Achn284751 369 GEAVAVNSVFELHKLLSRTGGIEK----VLSAVKEMKPQIVTVVEQEANHNGPVFLDRFTEALHYYSTLFDSLEGCgggsgLPSPSavsNQDKAMTEMY 463
                 ****************99999999....*********************************************877678887766666799999***** PP

        GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 lgr+i+nvvac g +r+erhetl++Wr r++++GF+pv+l+++a kqa++ll+ ++ +dgy+vee+ g+l+lgW++rpL+++SaW+
  Achn284751 464 LGRQICNVVACDGPNRVERHETLSQWRTRFGSSGFEPVHLGSNAFKQASMLLALFNgGDGYKVEENGGCLTLGWHTRPLIATSAWK 549
                 *************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.2E-3336103IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.5E-3236109No hitNo description
PROSITE profilePS5098568.003158528IPR005202Transcription factor GRAS
PfamPF035142.3E-136184549IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MKREHHRTLP PPNQTAYGAV GSSSAGKGKM WEENDDELLA VLGYNVKASD MNEVAQKLEH  60
LEEVMGQAQE DGLTHLASES VHYNPSDLSS WLESMISELN PLPDFENPSS LPSLPPPPPI  120
NDSFFEDSNS EYDLKAIPGK ALYPQFPPPN KRLKPTSASP SSSLSIDSVR PMVLVDSQEN  180
GVRLVHTLMA CAEAVQRDDV KLAEALVKQI DLLAVSQAGA MRKVAAYFAE ALARRIYRLY  240
PQDSVFSDLL QMYFYETCPY LKFAHFTANQ AILEAFSNKK RVHVIDFSMK QGMQWPALIQ  300
ALALRPGGPP TFRLTGIGPP SHDNSDHLQE VGWKLAQLAE TIHVEFEYRG FVANSLADLD  360
ASMLDLREGE AVAVNSVFEL HKLLSRTGGI EKVLSAVKEM KPQIVTVVEQ EANHNGPVFL  420
DRFTEALHYY STLFDSLEGC GGGSGLPSPS AVSNQDKAMT EMYLGRQICN VVACDGPNRV  480
ERHETLSQWR TRFGSSGFEP VHLGSNAFKQ ASMLLALFNG GDGYKVEENG GCLTLGWHTR  540
PLIATSAWKL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6817954814378Protein SCARECROW
5b3h_A3e-6817954813377Protein SCARECROW
5b3h_D3e-6817954813377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5886510.0KF588651.1 Actinidia deliciosa GA repressor DELLA (RGL1a) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028067857.10.0DELLA protein GAI1-like
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2R6PH140.0A0A2R6PH14_ACTCH; DELLA protein
TrEMBLV5QQ380.0V5QQ38_ACTDE; GA repressor DELLA
STRINGVIT_01s0011g05260.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21262462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein