PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn281921
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 500aa    MW: 55419.3 Da    PI: 7.5492
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn281921genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.52e-31175279199
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 
                 f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l+
  Achn281921 175 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGElGKDHLF 273
                 89***************************966778999*************************************************665889999999 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 + ++r+
  Achn281921 274 IDWRRR 279
                 999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-42170282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-29172281IPR015300DNA-binding pseudobarrel domain
CDDcd100172.74E-26173262No hitNo description
PfamPF023624.9E-29175279IPR003340B3 DNA binding domain
PROSITE profilePS5086314.522175280IPR003340B3 DNA binding domain
SMARTSM010194.4E-23175280IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MKSTISRRRG TSEHSFEWFL RCWCSFREVD LARGVGNWRA TANNRSMNFM AKSNSQGLYG  60
DDQNQNQNQD QSGSARGKFP FPSSLSNSSQ SYKSLVPDLT FQDHYHHHRP SQISRLELMD  120
ASPSALGNNS EEDPSPGAAD DDNNFRQGDW SSDGLRLAVG GSGSGGVGVE REHMFDKVVT  180
PSDVGKLNRL VIPKQHAEKY FPLDSSTNEK GLLLNFEDRN GKPWRFRYSY WNSSQSYVMT  240
KGWSRFVKEK KLDAGDIVSF QRGVGELGKD HLFIDWRRRP EAPELPQYFG SSNLPQHYLS  300
FHNHRSTAHH YPWSTSPLYL QPQSQPQHYS HFQNPNVTAY PYQSHYSGSS GTGPYGYNSV  360
VNPCSSSVIY LSSSSAGGQQ QQGGGMVQMQ SGGGGGGVED MPMVFESVPV VQGKAAAKRL  420
RLFGVNMDCP ISSESDECEM LSSTTTIMPH HSIMAAHPPY LSSTPIPPLQ LRLYNGSPLP  480
AIHSDIAKPS NKASFDLDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-651702823116B3 domain-containing transcription factor NGA1
5os9_B9e-651702823116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028076169.11e-143B3 domain-containing protein Os03g0120900-like
SwissprotO827992e-72NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A2R6QMW80.0A0A2R6QMW8_ACTCH; B3 domain-containing transcription factor
STRINGcassava4.1_022877m1e-115(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-70B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]