PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn281791
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRF
Protein Properties Length: 538aa    MW: 58126.2 Da    PI: 6.8442
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn281791genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.62.2e-23198240244
         WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                  ep+rCrRtDGKkWRCsr+v +++k+CErH h+ rsrsrk++e
  Achn281791 198 LEPWRCRRTDGKKWRCSRDVTPNQKYCERHAHKTRSRSRKPVE 240
                 69**************************************986 PP
2QLQ56.21e-19138173237
         QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                 aFTa+Q+q+L++Q  +yK+++a++PvPpeLl +i+k
  Achn281791 138 AFTASQWQELERQTAIYKCMMASLPVPPELLIPISK 173
                 8********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.1E-12137173IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.589138173IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.6E-14138171IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.182197241IPR014977WRC domain
PfamPF088793.3E-19199240IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MGSGNRSGLV DGTNEAASPE CDVGLGLRMQ GTESFPSKRM MMAMPHQHPH HHHHANPCSE  60
SSMGGGGGVC SGGGDGGSGP IYCNLSNQQL ASLSDIYDAI GAGSVSGAPR TLHPYSTSDS  120
SFKSFGGNMP AAAAAKVAFT ASQWQELERQ TAIYKCMMAS LPVPPELLIP ISKSPSPLPS  180
SQSNMFGVDL RFSRGSDLEP WRCRRTDGKK WRCSRDVTPN QKYCERHAHK TRSRSRKPVE  240
LASHNTNTNT KTNNSMNTHH PLVDLPANAT AQPFQKPIFH IPSMVSASTY AQPRCTEWFM  300
KGDPIPGSTS NQQWQQLMQS SSREGLNQGL KRYSEENYRS GSFFQQHYGE QHESMDTNSY  360
FDMDDGQRFQ NQQPSDQYGS VRGPKVGCLQ GGINADQTQT TRRFIDAWSS AEQEEMDEFS  420
NKYSGSSSGK LPLSSLTLSM SGGDGMDEEM VNSQTGLGMM DPERESGGGF KSQWLNPVLW  480
MGSPPGGPLG EALCLGFAGT AKEASNVPSP HGYSNSTTTS GCSKSSCEDS GHGLHFH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028118902.11e-176growth-regulating factor 8
TrEMBLA0A2R6QMV20.0A0A2R6QMV2_ACTCH; Growth-regulating factor like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125171820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.19e-31growth-regulating factor 8