PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn280691

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Nin-like

Protein Properties

Length: 691aa MW: 76938.4 Da PI: 5.4239

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn280691	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	38	3.2e-12	578	619	3	44
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRW 44 i+ledl+ +F l+ +d+Ak Lgv++ + Kr+CR++GI W Achn280691 578 RVITLEDLQPHFGLKRADVAKILGVSVATFKRRCRRNGITWW 619 569************************************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.217	563	648	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-12	580	619	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence Send to blast
MSEADIENQT SLPKPRETFM DLDLDLDGSW PFDQIVSANP TSPFFISSSE QPFSPPWAFS 60 YDNGDELAED ATSTLAGGDP ESVTESEART GNKRRLSTPC LGLTPPIGYP DGSCVIKERM 120 TQALRYFKES TEQHVLAQFW APVKNGGRYV LTTSGQPFVL GPHGNGLRQY RMASLMYMFS 180 VDGESDGVLG LPGRVFQQKL PEWTPNVQYY SNKEDPRLTH ALYCNVQGSL ALPVFGPSGQ 240 FCIGVLELIM TSPKINYAPE IDKVCKALED ELNVLVNQIC NEGRQKALIE ILEILTVVCE 300 THKLPLAQTW VPCRHRSVLA NGGGLKKSCS SFDGSCMGQI CMSITEVAFY VVDAHMWGFR 360 EACAEHHLQK GQGVTGRAFA SHNLCFCEDI TQFCKTEYPL VHYARMFGLT SSFAICLRST 420 HTGNDDYILE FFLPHHIRDH RDQRTSLDSI LVTMKQHFWS LWVASGKELE EEGRCIEIIK 480 ASMDEKLDPG LQYDQISQIV ILPPDPEGHS LEEKISVEII NQVMDEKLDS SEQQLFVEFD 540 DATKSGQKAA MPMSCAAISL SKMKNAMETR ERKCGTKRVI TLEDLQPHFG LKRADVAKIL 600 GVSVATFKRR CRRNGITWWN GNECSPCFKP VPKHCEPPGE KTTPSCKIPS IRGLTGTGNQ 660 VLDSSIVDIE GNLQEQNSFQ VENASKEVSR *

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence Send to blast

MSEADIENQT SLPKPRETFM DLDLDLDGSW PFDQIVSANP TSPFFISSSE QPFSPPWAFS  60
YDNGDELAED ATSTLAGGDP ESVTESEART GNKRRLSTPC LGLTPPIGYP DGSCVIKERM  120
TQALRYFKES TEQHVLAQFW APVKNGGRYV LTTSGQPFVL GPHGNGLRQY RMASLMYMFS  180
VDGESDGVLG LPGRVFQQKL PEWTPNVQYY SNKEDPRLTH ALYCNVQGSL ALPVFGPSGQ  240
FCIGVLELIM TSPKINYAPE IDKVCKALED ELNVLVNQIC NEGRQKALIE ILEILTVVCE  300
THKLPLAQTW VPCRHRSVLA NGGGLKKSCS SFDGSCMGQI CMSITEVAFY VVDAHMWGFR  360
EACAEHHLQK GQGVTGRAFA SHNLCFCEDI TQFCKTEYPL VHYARMFGLT SSFAICLRST  420
HTGNDDYILE FFLPHHIRDH RDQRTSLDSI LVTMKQHFWS LWVASGKELE EEGRCIEIIK  480
ASMDEKLDPG LQYDQISQIV ILPPDPEGHS LEEKISVEII NQVMDEKLDS SEQQLFVEFD  540
DATKSGQKAA MPMSCAAISL SKMKNAMETR ERKCGTKRVI TLEDLQPHFG LKRADVAKIL  600
GVSVATFKRR CRRNGITWWN GNECSPCFKP VPKHCEPPGE KTTPSCKIPS IRGLTGTGNQ  660
VLDSSIVDIE GNLQEQNSFQ VENASKEVSR *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028082392.1	0.0	protein NLP6-like
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	A0A2R6PDR5	0.0	A0A2R6PDR5_ACTCH; Uncharacterized protein
STRING	VIT_02s0025g02070.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13879	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]