PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn279231
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 376aa    MW: 41836.8 Da    PI: 7.6605
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn279231genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.8e-07131151526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C +f+r G C++Gd+C FaHg
  Achn279231 131 VCADFRR-GCCPRGDNCEFAHG 151
                 7999***.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.4E-5125155IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5126152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.591127153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5130153IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-5131151IPR000571Zinc finger, CCCH-type
SMARTSM003561.6161184IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.484161185IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MMMGSVCAEQ QHKFHASHQF LLNKKSLMRE IDIPPRKLLS RRVAAAEAEG FSPREESILL  60
QKFLPYNSGG GSEEDDDDAD PYSSDHFRMY EFKVRRCTRS RSHDWTDCPF AHPGEKARRR  120
DPRRFHYSGT VCADFRRGCC PRGDNCEFAH GVFECWLHPA RYRTEACKDG KNCKRKVCFF  180
AHSPRQLRLL PPSSADSPQS AVAAAERKYR NSSNHCCLFC HSVSASPTST LMEFPVSPQL  240
SPPSLSPPIS PAKPHSMNWF SPPLSRYGDR FGSGDLSYKD VVITELMSSL EGMNVNEGSS  300
HGVVGKRNLS LVDVNFNNTG DDQQQFVLSP STPSPSGSGG YFSHGDSSSK SFIDERVHDT  360
GLACPDLGWV NDLLT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028058381.11e-155zinc finger CCCH domain-containing protein 2-like
SwissprotQ9ZWA12e-82C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A2R6QTM90.0A0A2R6QTM9_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_009789499.11e-132(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105952125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-74C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]