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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Achn278081 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 227aa MW: 25047.9 Da PI: 4.2255 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 33.1 | 1.3e-10 | 37 | 60 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
+W++Ia++++ gRt++++k++w+++
Achn278081 37 RWSKIASHLP-GRTDNEIKNHWNTH 60
6*********.************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF46689 | 4.21E-10 | 32 | 70 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 4.8E-15 | 34 | 72 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS50090 | 6.934 | 34 | 61 | IPR017877 | Myb-like domain |
| CDD | cd00167 | 6.21E-9 | 34 | 61 | No hit | No description |
| Pfam | PF00249 | 3.0E-8 | 37 | 60 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 227 aa Download sequence Send to blast |
MIESISGFKI QMQKEIEVFF LNSENCYGVC GIAGLLRWSK IASHLPGRTD NEIKNHWNTH 60 IKKKLKKMGI DPLTHKPLPT NNNPINDDPP QKPPKDQDLL HPPPRSICEI TSEVGPNIEP 120 PIDQVNNGFC TDEVPLIEPH EINLVSSTSS SSSSSSSSYE DGNSVNIFED FLDLPCFDWG 180 YGLGFGDDDD GIRSSSLDFL IGGDSDGTQY SSMVVDQECM NLFELL* |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016482710.1 | 7e-38 | PREDICTED: protein ODORANT1-like | ||||
| Refseq | XP_016508400.1 | 4e-38 | PREDICTED: protein ODORANT1-like, partial | ||||
| TrEMBL | A0A2R6RJ55 | 1e-134 | A0A2R6RJ55_ACTCH; Uncharacterized protein | ||||
| STRING | XP_009616533.1 | 9e-37 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA12 | 24 | 2154 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G16600.1 | 1e-26 | myb domain protein 43 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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