PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn274251
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 439aa    MW: 48882.3 Da    PI: 7.0397
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn274251genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS146.33e-45942771181
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykal.ppsetseknsseelaalklfsevsPilkfshlt 97 
                 lv+lL++cAeav+ +d+++a+ lL++l+  a   g+++qR+a++f+++La rla  ++ + +  + p+ +  ++ s+++  al+l +e++P ++f+h++
  Achn274251  94 LVHLLISCAEAVACRDKSRASVLLSELRASALVFGSSFQRVASCFVQGLADRLAMVQPlGAVGFVePTMNLMDHASDKKEEALQLVYELCPHIQFGHFV 192
                 68****************************************************944413333442333333444999999****************** PP

        GRAS  98 aNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                 aN+aIlea+ege+ vH++D++++    +G QW   +q+La+R+++pp +lRiTgvg      +++   +g+ L+ +A++lg+++++  l
  Achn274251 193 ANSAILEAFEGESFVHVVDLGMTlglaHGYQWRQVIQSLADRAGPPPrHLRITGVGL----CAKRFLVIGDELEAYAQSLGINLDILQL 277
                 *******************98653333889*************99999*********....99********************998665 PP

2GRAS178.54.7e-55275437208374
        GRAS 208 lqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr 306
                 lqlh +++es    +   +vL+++ +lsPkv+v+veq+++hn++ F+ rf++al+yysa+fdsl+a lp+ +  r+k+E++++++ei+n+v+ceg +r+
  Achn274251 275 LQLHCVVKESRGALN---SVLQIIHELSPKVLVLVEQDSSHNGPFFVGRFMDALHYYSAIFDSLDAMLPKYDTRRAKMEQFFFAEEIKNIVSCEGPARV 370
                 577877766665555...8******************************************************************************** PP

        GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 erhe++ +Wr+r+++aGF+p+p++  +++qak  l k+k  dgy++ ee+g+lvlgWk++p++++S+W+
  Achn274251 371 ERHEKVDQWRRRMSRAGFQPAPIK--IVAQAKQWLGKIKaCDGYTILEEKGCLVLGWKSKPIIAASCWK 437
                 **********************95..899***************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.29968418IPR005202Transcription factor GRAS
PfamPF035141.6E-52275437IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MAYYLHPYLP PLENTSTTLF PTFSDETVGH KRLKRTTSTN SLNGMSRLQF RDHIWTYSQR  60
YLAAEAVEEA AAAMMGGSED GKKVEDEAGD EMRLVHLLIS CAEAVACRDK SRASVLLSEL  120
RASALVFGSS FQRVASCFVQ GLADRLAMVQ PLGAVGFVEP TMNLMDHASD KKEEALQLVY  180
ELCPHIQFGH FVANSAILEA FEGESFVHVV DLGMTLGLAH GYQWRQVIQS LADRAGPPPR  240
HLRITGVGLC AKRFLVIGDE LEAYAQSLGI NLDILQLHCV VKESRGALNS VLQIIHELSP  300
KVLVLVEQDS SHNGPFFVGR FMDALHYYSA IFDSLDAMLP KYDTRRAKME QFFFAEEIKN  360
IVSCEGPARV ERHEKVDQWR RRMSRAGFQP APIKIVAQAK QWLGKIKACD GYTILEEKGC  420
LVLGWKSKPI IAASCWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-5710143626378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028063309.10.0DELLA protein RGL1-like
TrEMBLA0A2R6PDM50.0A0A2R6PDM5_ACTCH; DELLA protein
STRINGAquca_123_00013.10.0(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81672130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-71RGA-like 1