PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn274251 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 439aa MW: 48882.3 Da PI: 7.0397 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 146.3 | 3e-45 | 94 | 277 | 1 | 181 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykal.ppsetseknsseelaalklfsevsPilkfshlt 97 lv+lL++cAeav+ +d+++a+ lL++l+ a g+++qR+a++f+++La rla ++ + + + p+ + ++ s+++ al+l +e++P ++f+h++ Achn274251 94 LVHLLISCAEAVACRDKSRASVLLSELRASALVFGSSFQRVASCFVQGLADRLAMVQPlGAVGFVePTMNLMDHASDKKEEALQLVYELCPHIQFGHFV 192 68****************************************************944413333442333333444999999****************** PP GRAS 98 aNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181 aN+aIlea+ege+ vH++D++++ +G QW +q+La+R+++pp +lRiTgvg +++ +g+ L+ +A++lg+++++ l Achn274251 193 ANSAILEAFEGESFVHVVDLGMTlglaHGYQWRQVIQSLADRAGPPPrHLRITGVGL----CAKRFLVIGDELEAYAQSLGINLDILQL 277 *******************98653333889*************99999*********....99********************998665 PP | |||||||
2 | GRAS | 178.5 | 4.7e-55 | 275 | 437 | 208 | 374 |
GRAS 208 lqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr 306 lqlh +++es + +vL+++ +lsPkv+v+veq+++hn++ F+ rf++al+yysa+fdsl+a lp+ + r+k+E++++++ei+n+v+ceg +r+ Achn274251 275 LQLHCVVKESRGALN---SVLQIIHELSPKVLVLVEQDSSHNGPFFVGRFMDALHYYSAIFDSLDAMLPKYDTRRAKMEQFFFAEEIKNIVSCEGPARV 370 577877766665555...8******************************************************************************** PP GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 erhe++ +Wr+r+++aGF+p+p++ +++qak l k+k dgy++ ee+g+lvlgWk++p++++S+W+ Achn274251 371 ERHEKVDQWRRRMSRAGFQPAPIK--IVAQAKQWLGKIKaCDGYTILEEKGCLVLGWKSKPIIAASCWK 437 **********************95..899***************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.299 | 68 | 418 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-52 | 275 | 437 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 439 aa Download sequence Send to blast |
MAYYLHPYLP PLENTSTTLF PTFSDETVGH KRLKRTTSTN SLNGMSRLQF RDHIWTYSQR 60 YLAAEAVEEA AAAMMGGSED GKKVEDEAGD EMRLVHLLIS CAEAVACRDK SRASVLLSEL 120 RASALVFGSS FQRVASCFVQ GLADRLAMVQ PLGAVGFVEP TMNLMDHASD KKEEALQLVY 180 ELCPHIQFGH FVANSAILEA FEGESFVHVV DLGMTLGLAH GYQWRQVIQS LADRAGPPPR 240 HLRITGVGLC AKRFLVIGDE LEAYAQSLGI NLDILQLHCV VKESRGALNS VLQIIHELSP 300 KVLVLVEQDS SHNGPFFVGR FMDALHYYSA IFDSLDAMLP KYDTRRAKME QFFFAEEIKN 360 IVSCEGPARV ERHEKVDQWR RRMSRAGFQP APIKIVAQAK QWLGKIKACD GYTILEEKGC 420 LVLGWKSKPI IAASCWKC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-57 | 101 | 436 | 26 | 378 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028063309.1 | 0.0 | DELLA protein RGL1-like | ||||
TrEMBL | A0A2R6PDM5 | 0.0 | A0A2R6PDM5_ACTCH; DELLA protein | ||||
STRING | Aquca_123_00013.1 | 0.0 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8167 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66350.1 | 1e-71 | RGA-like 1 |