PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn272241

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 786aa MW: 89580.2 Da PI: 6.7363

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn272241	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98.1	9.8e-31	77	169	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk ++ +gkw+v+ +++eHnHel+p Achn272241 77 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKIQDsSGKWVVSGFVKEHNHELVP 169 9*************************************998888545677889*************99***************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.9E-29	77	169	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-32	290	382	IPR018289	MULE transposase domain
Pfam	PF04434	8.4E-12	558	604	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.251	570	606	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-9	581	608	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 786 aa Download sequence Send to blast
MESEVIEFDI GLGGGGGGGS SGDEDGMDGQ HPVMDEDMAD SSPTGGAVGA IYIPEGDPDL 60 EPYENMEFES EEAAKAFYNS YARRVGFSTR VSSSRRSRKD GAIIQRSFVC AKEGFRNLNE 120 KRTKDREIKR PRTITRVGCK ASLSVKIQDS SGKWVVSGFV KEHNHELVPP DQVHCLRSHR 180 QISGPAKTLI DTLQAAGMGP RKIMSALIKE YGGISKVGFT EVDCRNYMRN NRQRSFEGEI 240 QLLLDYLRQM HSENPSFFYA VQGDEDQYTG NVLWADPKAR MNYTYFGDTV TFDTTYRSNR 300 YRLPFAPFTG VNHHGQPVLF GCAFLINESE ASFVWLFKTW LMAMSGRPPV SITTDHDMVI 360 RSAFKQVFPE TRHRFCKWHI FKKCQEKLSH VFLPHPNFEA DFHKCVNLTD SIEEFESCWL 420 SLVDKYDLRD HEWLQTIYSA RKQWVPVYLR DTFFAEMSIT QRSDSMNSYF DGYVNASTNL 480 NQFFKLYEKA LESRNEKEVK ADYDTMNTSP VLKTPSPMEK QASELYTRKL FVRFQEELVG 540 TLTFMASKVD DDGDVTTYQV AKFGEDHKAY YVKFNVLEMR ATCSCQMFEF SGLLCRHVLA 600 VFRVTNVLTL PSHYILKRWT RNAKSTIILE ERATGVFNSY LESHTVRFNT LRHEAFKFVD 660 EGAESIDSYN MAMVALQEAS KRVAIATKNE GKTPMINGRI TEDSTNGGSQ ANICSGDRPK 720 SISQQFSEDD MDKKIRDLSH ELDCANRKCE VYGANLLSVL RDIEDHKQQL SVKVQNVKLS 780 MKDVL*

Sequence ? help Back to Top

Protein Sequence Length: 786 aa Download sequence Send to blast

MESEVIEFDI GLGGGGGGGS SGDEDGMDGQ HPVMDEDMAD SSPTGGAVGA IYIPEGDPDL  60
EPYENMEFES EEAAKAFYNS YARRVGFSTR VSSSRRSRKD GAIIQRSFVC AKEGFRNLNE  120
KRTKDREIKR PRTITRVGCK ASLSVKIQDS SGKWVVSGFV KEHNHELVPP DQVHCLRSHR  180
QISGPAKTLI DTLQAAGMGP RKIMSALIKE YGGISKVGFT EVDCRNYMRN NRQRSFEGEI  240
QLLLDYLRQM HSENPSFFYA VQGDEDQYTG NVLWADPKAR MNYTYFGDTV TFDTTYRSNR  300
YRLPFAPFTG VNHHGQPVLF GCAFLINESE ASFVWLFKTW LMAMSGRPPV SITTDHDMVI  360
RSAFKQVFPE TRHRFCKWHI FKKCQEKLSH VFLPHPNFEA DFHKCVNLTD SIEEFESCWL  420
SLVDKYDLRD HEWLQTIYSA RKQWVPVYLR DTFFAEMSIT QRSDSMNSYF DGYVNASTNL  480
NQFFKLYEKA LESRNEKEVK ADYDTMNTSP VLKTPSPMEK QASELYTRKL FVRFQEELVG  540
TLTFMASKVD DDGDVTTYQV AKFGEDHKAY YVKFNVLEMR ATCSCQMFEF SGLLCRHVLA  600
VFRVTNVLTL PSHYILKRWT RNAKSTIILE ERATGVFNSY LESHTVRFNT LRHEAFKFVD  660
EGAESIDSYN MAMVALQEAS KRVAIATKNE GKTPMINGRI TEDSTNGGSQ ANICSGDRPK  720
SISQQFSEDD MDKKIRDLSH ELDCANRKCE VYGANLLSVL RDIEDHKQQL SVKVQNVKLS  780
MKDVL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028064185.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2R6R750	0.0	A0A2R6R750_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	EOX98949	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]