PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn271611 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | HB-other | ||||||||
Protein Properties | Length: 283aa MW: 31302.1 Da PI: 4.3567 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 20.7 | 7.3e-07 | 213 | 246 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 ++ +++ee+ +L++ +gL ++q+ +WF N+R ++ Achn271611 213 KHLLQEEEKMKLSEITGLGQKQINNWFINQRKRH 246 677899*************************885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.3E-20 | 54 | 98 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.1E-20 | 56 | 96 | IPR005540 | KNOX1 |
SMART | SM01256 | 4.7E-24 | 101 | 152 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.6E-23 | 105 | 151 | IPR005541 | KNOX2 |
SMART | SM00389 | 0.0019 | 187 | 253 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.60E-8 | 211 | 250 | No hit | No description |
SuperFamily | SSF46689 | 4.71E-10 | 213 | 260 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.8E-14 | 216 | 251 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.394 | 218 | 249 | IPR001356 | Homeobox domain |
Pfam | PF05920 | 4.7E-9 | 218 | 245 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 224 | 247 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MDELYRLHST ISCLDDVSGV GTFSTNMSGL HGPIGDMDRF ETVGMEVAGS GMSDLIKAQI 60 ANHPLYPNLV SAYIECRKVG APPEMASLLE EISKENNPIS SRCEIGVDPE LDEFMESYFE 120 VLHKYKEELS KPFDEATTFL SDIESQLSNL CKETLTMGRT YHSDEEAGTS SEDLSCGEVE 180 AAESQESSGA RPGDQELKEM LLRKISSSVI KNKHLLQEEE KMKLSEITGL GQKQINNWFI 240 NQRKRHWKPS EDMRFALMEG VSGSMGGPMY FDNTGGTSSV DI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028097641.1 | 1e-149 | homeobox protein knotted-1-like 1 | ||||
Swissprot | Q9FP29 | 9e-76 | KNOS1_ORYSJ; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A2R6Q1U5 | 0.0 | A0A2R6Q1U5_ACTCH; Homeobox protein knotted-1-like | ||||
STRING | VIT_14s0060g01180.t01 | 1e-120 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA753 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 8e-62 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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