PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn271311
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 693aa    MW: 77054.1 Da    PI: 6.8937
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn271311genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51e-20527576255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrdp   + + +r++lg+f+tae+Aa a+++a+++++g
  Achn271311 527 HYRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEGAALAYDEAALRFRG 576
                 7********.**********9...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002398.3E-432143IPR000008C2 domain
CDDcd040487.28E-2941150No hitNo description
SuperFamilySSF495628.67E-1249155IPR000008C2 domain
PROSITE profilePS500048.81449128IPR000008C2 domain
PfamPF001684.2E-849138IPR000008C2 domain
Gene3DG3DSA:2.60.40.1503.4E-1149146IPR000008C2 domain
Gene3DG3DSA:2.60.40.1504.5E-10159271IPR000008C2 domain
CDDcd040479.31E-32178272No hitNo description
PROSITE profilePS500048.814180264IPR000008C2 domain
PfamPF001686.4E-7180272IPR000008C2 domain
SuperFamilySSF495622.95E-12180270IPR000008C2 domain
SMARTSM002391.2E-4180279IPR000008C2 domain
CDDcd014597.82E-113294526No hitNo description
SuperFamilySSF533006.39E-17312496IPR002035von Willebrand factor, type A
SMARTSM003272.6E-8313510IPR002035von Willebrand factor, type A
PfamPF070022.2E-75334526IPR010734Copine
Gene3DG3DSA:3.30.730.101.4E-32526585IPR001471AP2/ERF domain
CDDcd000183.66E-33527585No hitNo description
PfamPF008472.0E-14527576IPR001471AP2/ERF domain
PROSITE profilePS5103224.829527584IPR001471AP2/ERF domain
SMARTSM003801.5E-37527590IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-22527585IPR016177DNA-binding domain
PRINTSPR003671.2E-10528539IPR001471AP2/ERF domain
PRINTSPR003671.2E-10550566IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MGNCYSAGRQ TAVGGGPSPR SNPADGANDA VDYLLTSRGY RGLFSQIESD PIAVVYTKGR  60
DGAIQELGRT EIVLNSLNPK WIRKHTVTYH FEVVQTLVFR VYDVDTQFHD LDVKMLKLDE  120
QQFLGEATCK LSEIVTKSYR SLTLDLVCKD ETMGSYPTNF GTLTVHAEES VSSKTKTELV  180
LRCSDLESRD LFSRSDPFLV ISKTVESGIP IPICKTEVLK NDHNPAWKPV FLNIQQFGSK  240
NSPLIIEYFN FNSNGKHDLI GKFQKSVAEL EKLHSVGKGA YLLLPTATEH NHHDKFCESV  300
QHTFLDYLSN GCKLNFMVAI DFTASNGNPR LPDSLHYIDP SGRPNAYQRA ILEVGEVLQF  360
YDSDKRFPAW GFGARPIDGP ISHCFNLNGS SNYCEVDGIQ GIMKAYTSAL FNVSLAGPTL  420
FGPVITTASQ IASQSLASNQ QKYFILLIIT DGVITDLQET KDALVKASDL PFSILIVGVG  480
GADFKEMEIL DADKNEKLES SSGRIASRDI VQFVPFQDVQ SNQKRRHYRG VRQRPWGKWA  540
AEIRDPNKAA RVWLGTFDTA EGAALAYDEA ALRFRGNKAK LNFPERVQAR TDFGYLRNHQ  600
EKNYFDLLHY ARLLRCGGSG MNNDVSGIYP RGTFVSQPLS AISPASASTS QQQQGEVMRF  660
GETILHPKPQ GDIIKEGNYL MLNLGAFHFE EK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-27524589268ATERF1
3gcc_A3e-27524589268ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of cell death and defense responses. May repress a number of R genes and may have effects in promoting growth and development. May function in membrane trafficking and in fusion of vesicles with plasma membrane (By similarity). {ECO:0000250, ECO:0000269|PubMed:16367962}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028058921.10.0protein BONZAI 1-like
SwissprotQ5S1W20.0BON2_ARATH; Protein BONZAI 2
TrEMBLA0A2R6PDE50.0A0A2R6PDE5_ACTCH; Protein BONZAI like
STRINGEMJ114560.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA197322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-28ethylene response factor 110
Publications ? help Back to Top
  1. Yang S, et al.
    The BON/CPN gene family represses cell death and promotes cell growth in Arabidopsis.
    Plant J., 2006. 45(2): p. 166-79
    [PMID:16367962]
  2. Yang H,Yang S,Li Y,Hua J
    The Arabidopsis BAP1 and BAP2 genes are general inhibitors of programmed cell death.
    Plant Physiol., 2007. 145(1): p. 135-46
    [PMID:17631528]
  3. Marmagne A, et al.
    A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome.
    Mol. Cell Proteomics, 2007. 6(11): p. 1980-96
    [PMID:17644812]