PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn269641
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 591aa    MW: 65240.1 Da    PI: 8.6293
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn269641genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA36.56.7e-126392635
        GATA  6 ttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                +  TplWR+gp  ++ LCnaCG ++r kg+
  Achn269641 63 AAGTPLWRNGPPEKPILCNACGSRWRTKGT 92
                567********66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.001662106IPR000679Zinc finger, GATA-type
PfamPF003201.1E-96392IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.7E-86392IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.71E-66497No hitNo description
CDDcd002023.00E-1166105No hitNo description
PfamPF139195.0E-6333392IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MDLAITVVSQ LRNTPAFNQK IKSDHRSLTN PSNGQIHFFH AYRSHLRILV FAVVVVLLTV  60
SGAAGTPLWR NGPPEKPILC NACGSRWRTK GTLVNYTPLH SRAEPDEFEN YRVSRVKSVS  120
IKNKEAKVLK RKQNHDNAVV GGVAPDHNQV SRKGLDEDTS NRSSSGSAIS NSESCVHFGS  180
GDASDLTGPA QSIVWDTMVP SRKRTCVSRP KPSSVEKLTK DLYTILHEQQ SSHFSQSSEE  240
DLLFESNTPM VSVEIGHGSV LIRHPSSIAR EEESEASSLS VDNKLNSLKE AYSCLAAHSV  300
HIDNKGSKFP SPGIEKSKKP VGQGMQQDQF RRDKAHHEKR QILGNRNSPL RYIDLKEVVN  360
FDEFDSHPTN EEQQQLLKYL PSADTDRFPD SLESMFASPQ SEENLSSFQK LLGERKIKGV  420
KAEDSSTLNR LALCNLTKSK WVEQYNLLKE AKRKTSNERA IVLGEPNAIA SGNSTNAKRL  480
RDAQFQTFTG ANTTMKSPKR AIKGGYDHKV PIDNDGSCFS PRSLFGLPPD TGSLMLDSFQ  540
FMGESSDQDL LLDVPSNNSF PEAELLLPTS SFSAQASTSS SSVYPQLVRP *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028112923.10.0GATA transcription factor 26-like
SwissprotQ8W4H11e-129GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A2R6PMC30.0A0A2R6PMC3_ACTCH; GATA transcription factor
STRINGPOPTR_0003s08080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-121GATA transcription factor 26