PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn269421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 24090.7 Da PI: 9.8307 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.4 | 1.5e-17 | 77 | 127 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y GVr ++ +g+++AeIrd + + +r++lg+f taeeAa a+++a+ ++g Achn269421 77 RYIGVRKRP-WGKYAAEIRDSTR---HgARVWLGTFTTAEEAALAYDQAAFVMRG 127 799******.**********422...25***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.39E-28 | 76 | 134 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-21 | 77 | 136 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-28 | 77 | 135 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-32 | 77 | 141 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.443 | 77 | 135 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-12 | 77 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 78 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 101 | 117 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MESQCVLEHS VRLRRRLWPV TKRLSWFNFL PKSSLSLEEN NSSDDTCLPH FQSEKVKEKC 60 LETDSSSGTK DLKKEKRYIG VRKRPWGKYA AEIRDSTRHG ARVWLGTFTT AEEAALAYDQ 120 AAFVMRGRLA RLNFSTDKVC ESLREMKCKV CESLRKMKCR CENGSSSSKA LKEINKKGLK 180 ILRGKKKEEN NMLVFEDLGA DLLDELLSSS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-25 | 77 | 134 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012838903.1 | 3e-53 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Refseq | XP_028056765.1 | 1e-52 | ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 3e-43 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A2R6RJ73 | 1e-130 | A0A2R6RJ73_ACTCH; Ethylene-responsive transcription factor | ||||
STRING | Migut.K00942.1.p | 8e-53 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-24 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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