PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn268811 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB_related | ||||||||
Protein Properties | Length: 174aa MW: 18270.9 Da PI: 10.8235 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.4 | 4.4e-10 | 4 | 45 | 6 | 47 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 teE l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky Achn268811 4 TEESRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 45 89***************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.576 | 1 | 50 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.7E-8 | 4 | 45 | IPR001005 | SANT/Myb domain |
SMART | SM00717 | 0.0093 | 4 | 48 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-8 | 4 | 44 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-12 | 5 | 48 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 2.98E-7 | 5 | 46 | No hit | No description |
SuperFamily | SSF46689 | 1.11E-11 | 5 | 51 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MTKTEESRLF LLGLDKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNKDRRRSS 60 IHDITSVNSG DVSVPQGPIT GQTNGSAAGA PGKSNKPAPQ TPGAPMGVGM YDAPTIGQPI 120 GPLVSAVGTP VNLPPPAHMA YGVRASVPAQ VVPGAPMNMG PMTYPMPHTS AHR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028115549.1 | 1e-101 | transcription factor SRM1-like | ||||
Swissprot | Q9FNN6 | 4e-69 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A2R6PC12 | 1e-108 | A0A2R6PC12_ACTCH; Transcription factor DIVARICATA like | ||||
STRING | Gorai.013G067600.1 | 2e-93 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4149 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-71 | MYB family protein |
Publications ? help Back to Top | |||
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