PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn268801
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 198aa    MW: 21500 Da    PI: 5.0227
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn268801genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49.1e-101255445
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     W++e d+ + +a + ++ +   +W++Ia+ ++ g+t +++k+++ 
       Achn268801 12 WSKEQDKSFENALATYPEEsldRWEKIAADVQ-GKTFEEIKHHYE 55
                     *****************99*************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.841458IPR017877Myb-like domain
SMARTSM007172.0E-6860IPR001005SANT/Myb domain
SuperFamilySSF466896.77E-111065IPR009057Homeodomain-like
PfamPF002495.4E-81255IPR001005SANT/Myb domain
CDDcd001671.27E-71258No hitNo description
Gene3DG3DSA:1.10.10.601.2E-41256IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MTADESNNSS GWSKEQDKSF ENALATYPEE SLDRWEKIAA DVQGKTFEEI KHHYELLVDD  60
INDIESGRVP LPCYNSSSDG STSHSGEEGT SKKGGHGGNF NSDSNHGGKA SRSDQERRKG  120
IAWTEDEHSS PEPETRDNEP SRRQVSPKGV AGARTDGDVA RRSLTETVEA CRGHVGPLQV  180
QIEPFRGSSG SVMAHRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1912771176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021811355.14e-70transcription factor SRM1
RefseqXP_021811356.14e-70transcription factor SRM1
RefseqXP_028104917.13e-72transcription factor SRM1-like
RefseqXP_028104918.13e-72transcription factor SRM1-like
RefseqXP_028104920.13e-72transcription factor SRM1-like
SwissprotQ9FNN64e-41SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2R6PC127e-71A0A2R6PC12_ACTCH; Transcription factor DIVARICATA like
STRINGXP_008221083.11e-67(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41492445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-38MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]