PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn267491
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 341aa    MW: 38222 Da    PI: 7.2431
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn267491genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.22.2e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+++++++G g+W++ ++  g++R++k+c++rw +yl
       Achn267491 15 KGPWTPEEDQKLINYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding52.51.2e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE++ ++++++  G++ W++Ia +++ gRt++++k++w+++l
       Achn267491  68 RGNFSDEEEQTIINLHAIVGNK-WSAIATHLP-GRTDNEIKNFWNSHL 113
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.2531062IPR017930Myb domain
SuperFamilySSF466894.58E-3212109IPR009057Homeodomain-like
SMARTSM007173.4E-161464IPR001005SANT/Myb domain
PfamPF002492.3E-181562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-251669IPR009057Homeodomain-like
CDDcd001674.95E-131762No hitNo description
PROSITE profilePS5129426.32163117IPR017930Myb domain
SMARTSM007174.7E-1667115IPR001005SANT/Myb domain
PfamPF002492.2E-1568113IPR001005SANT/Myb domain
CDDcd001677.04E-1270113No hitNo description
Gene3DG3DSA:1.10.10.606.8E-2770117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDRSPISNEN VGLKKGPWTP EEDQKLINYI QKHGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPNIKRGN FSDEEEQTII NLHAIVGNKW SAIATHLPGR TDNEIKNFWN SHLRKKLLQM  120
GIDPVTHRPR TDLNLLANLP QLLAAATSLS NPIVNPWDNS LRFHTDATVQ LAKSHLLHNI  180
LQALSTSSAP PPTMEALNFL GSVPLVDQHQ LYEYLRGSSH LEDFGNRPIS LASNPSQIPF  240
GTCLNLHVHQ PSRNVQPMTN SKPFHGDNND NCNQFTFPAG NSLPALISIS PECSTVNQME  300
NKINPTEHIS NPSSTSTNFE AWEKLMEDEA GDSYWREIIE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29131175108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003634006.11e-146PREDICTED: transcription factor MYB39
RefseqXP_028112713.11e-146transcription factor MYB53-like isoform X1
TrEMBLA0A2R6RQF70.0A0A2R6RQF7_ACTCH; Transcription factor like
STRINGVIT_16s0039g01710.t011e-145(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.12e-94myb domain protein 107