PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn265511

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 934aa MW: 102041 Da PI: 4.5521

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn265511	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.0005	113	135	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 kC +C+++F k++L +H+ + H Achn265511 113 KCDKCTMTFDVKDDLLHHLLSsH 135 8******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.067	112	135	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.411	112	140	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	114	135	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.452	157	188	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.076	157	179	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	159	179	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 934 aa Download sequence Send to blast
MNQKDTEQEG HDDVKCPNGR QFVSCKEVSS YLLSLGLQDV NRRNCGQSSE NTQLTYKVAC 60 GNSADLAVKE INERGDLVCY SSSVITYVSN DHVKHVTSVV ENSGEIQSGE ILKCDKCTMT 120 FDVKDDLLHH LLSSHRRKRS RFGSSITDGV IIKDGQYECQ FCHKSFNERN RYNGHVGAHK 180 RYHLNEASPG VLSMQNSVGP VSLGGVPPKE STMQTPSGDD CDSVNFHYNA DNDLKPVSPQ 240 SIFEAGSVAD MSSNEDNVLS HDELDLKSNK NSTNFTDEFC VPDENYKMNK TVDETAAAAK 300 SNFCLDSEAL SGSETKIDGE ASIVECLASR VDDCPVGQGR SMGSRPPSLL SYEKTCGAEI 360 DVNGDSISGE EPNQEAGTES VLLAASVNVQ TCGLENKEDV HFTSPMEQYK LDSEKFDNES 420 IHGFCSRAGP DEDLFSEGKQ QNGFGGCSLV PVNNDKKCGN FNNVNVVSTS APAESKQKRG 480 SESIDEKCVK DNVHTVSIST VSKLKLNAIY NSGNKEVMIG CGSGHSGRDE DAVARVEQKN 540 SENSLINSPR KEPLRDIEEY MRAGTAYTME EFGLDEGSES SLFIRSGYEQ TCGVNIDIGN 600 TSTRKMEEPK LDEFQTYRND ELAFDISNSR PNVQERSLVF CSLVLSGNEQ KRNVEEIATG 660 VMNSTEEAPK QESSLDTGLL TRSCTGKTIG DIYNMNSVST SHSEEPKHDE GQSGSNNELI 720 LDFGNNYSGI VADVVNRVPI ERTFSFETYL SRGNNSVEKD LKLESGLLGP SCYPSTCGDE 780 NNLNRVHSGR FWEGSMIDEV GSSGHDKLTI AFGSSNAQPD GKYDSMSGFE GTQSGRSEHV 840 EFSFLTPQSL NPLPVDSKAL SYETEMRGFD SSFWLEKDAL SLNIAARNHV TTVCAWCRNE 900 FHQDSVHSGT QTGAVVSICP TCSANVSAQF NFF*

Sequence ? help Back to Top

Protein Sequence Length: 934 aa Download sequence Send to blast

MNQKDTEQEG HDDVKCPNGR QFVSCKEVSS YLLSLGLQDV NRRNCGQSSE NTQLTYKVAC  60
GNSADLAVKE INERGDLVCY SSSVITYVSN DHVKHVTSVV ENSGEIQSGE ILKCDKCTMT  120
FDVKDDLLHH LLSSHRRKRS RFGSSITDGV IIKDGQYECQ FCHKSFNERN RYNGHVGAHK  180
RYHLNEASPG VLSMQNSVGP VSLGGVPPKE STMQTPSGDD CDSVNFHYNA DNDLKPVSPQ  240
SIFEAGSVAD MSSNEDNVLS HDELDLKSNK NSTNFTDEFC VPDENYKMNK TVDETAAAAK  300
SNFCLDSEAL SGSETKIDGE ASIVECLASR VDDCPVGQGR SMGSRPPSLL SYEKTCGAEI  360
DVNGDSISGE EPNQEAGTES VLLAASVNVQ TCGLENKEDV HFTSPMEQYK LDSEKFDNES  420
IHGFCSRAGP DEDLFSEGKQ QNGFGGCSLV PVNNDKKCGN FNNVNVVSTS APAESKQKRG  480
SESIDEKCVK DNVHTVSIST VSKLKLNAIY NSGNKEVMIG CGSGHSGRDE DAVARVEQKN  540
SENSLINSPR KEPLRDIEEY MRAGTAYTME EFGLDEGSES SLFIRSGYEQ TCGVNIDIGN  600
TSTRKMEEPK LDEFQTYRND ELAFDISNSR PNVQERSLVF CSLVLSGNEQ KRNVEEIATG  660
VMNSTEEAPK QESSLDTGLL TRSCTGKTIG DIYNMNSVST SHSEEPKHDE GQSGSNNELI  720
LDFGNNYSGI VADVVNRVPI ERTFSFETYL SRGNNSVEKD LKLESGLLGP SCYPSTCGDE  780
NNLNRVHSGR FWEGSMIDEV GSSGHDKLTI AFGSSNAQPD GKYDSMSGFE GTQSGRSEHV  840
EFSFLTPQSL NPLPVDSKAL SYETEMRGFD SSFWLEKDAL SLNIAARNHV TTVCAWCRNE  900
FHQDSVHSGT QTGAVVSICP TCSANVSAQF NFF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028111577.1	0.0	uncharacterized protein LOC114309884
TrEMBL	A0A2R6QYE1	0.0	A0A2R6QYE1_ACTCH; Methyl-CpG-binding domain-containing protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7850	16	19