PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn264991 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C2H2 | ||||||||
Protein Properties | Length: 123aa MW: 13214.5 Da PI: 7.5739 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.7 | 1e-05 | 7 | 29 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+++F++ L H++ H Achn264991 7 YKCTLCPRTFTSGQGLAGHMNAH 29 9*******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.93E-7 | 4 | 36 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.7E-4 | 5 | 30 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.9E-6 | 6 | 29 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 7 | 29 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.18 | 7 | 34 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 9 | 29 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MERNKVYKCT LCPRTFTSGQ GLAGHMNAHQ YDHVYQSERS PNLRLPSNPA PELARPKGTT 60 GVTYYQAPVV QAGLGGGGSQ SSSERTVTNP NHRVAAKGGE DEEDVTSETR VEVDTELRLG 120 RG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05120.1 | 7e-07 | C2H2 family protein |