PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn264671
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 284aa    MW: 31877.8 Da    PI: 6.6211
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn264671genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.6e-171470146
                     TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqk 46
                     +g+W++eEd +l+ ++ ++G+g            +W+ Ia+ ++ gRt++++k++w++
       Achn264671 14 KGPWSPEEDAKLKAYIDKYGTGvkvgvkqsscmiRWSVIAAQLP-GRTDNDIKNYWNT 70
                     79******************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-23576IPR009057Homeodomain-like
SuperFamilySSF466892.84E-14877IPR009057Homeodomain-like
PROSITE profilePS5129421.352976IPR017930Myb domain
SMARTSM007177.5E-161374IPR001005SANT/Myb domain
PfamPF002493.1E-151470IPR001005SANT/Myb domain
CDDcd001675.84E-131672No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKAYID KYGTGVKVGV KQSSCMIRWS VIAAQLPGRT  60
DNDIKNYWNT KLKKKLLGRR KQSNNINRLS ATQEYPKDPN GVDHNVCGPV LSNSAVERLQ  120
LHMQLQTLQN PNLSFYTNPS LWPNKLHPLQ EKMIKSLQFM NESTYNPNLI QHVSQLGQGH  180
NCNFHEQDYS PITGLKIDEL ASSLNGLPSS DGMEHSVQAE LDDLVNNKTF GFPQQEDSIA  240
EFDCFKDMDD GAKDSLVWWS NDLESKLPAS SNSWDFLVGY SLQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028083497.11e-106transcription factor MYB36-like
RefseqXP_028089083.11e-106transcription factor MYB36-like
SwissprotQ9FKL21e-53MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A2R6Q8S40.0A0A2R6Q8S4_ACTCH; Transcription factor like
STRINGEOY317642e-92(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-50myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]